Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1559 ATGAGCAACTTTGGCACCCTCTTCACATCTTCCTTGGAGGTTGGTGTCATTGTTCGTGACTCTCACGGTATTGCTCAAGTCAAGAGTGTCACTGGCAGTAAAATCCTTCGCATTCTGAAAGCTCACAGACTTGCGCCTGAGATCCCTGAGGATCTGTACCATTTGATCAAGAAGGTAGTGTCGATTAGCAAGCATCTGGAAAGGAACAGAAAAGACAAGGACTCTAAGTTCAGGTTGATTCTTGTGGAGAGCAGAATCCACAGGCTTGCTCGCTACTACAAGAAGACCAAAAAGCTCCCACCTGCATGGAAGTAG 315 0.4667 MSNFGTLFTSSLEVGVIVRDSHGIAQVKSVTGSKILRILKAHRLAPEIPEDLYHLIKKVVSISKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPAWK* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1559 104 SMART Ribosomal_S15_2 34 104 IPR000589 GO:0003735|GO:0005840|GO:0006412
Dod08g1559 104 CDD Ribosomal_S15p_S13e 34 104 IPR000589 GO:0003735|GO:0005840|GO:0006412
Dod08g1559 104 ProSitePatterns Ribosomal protein S15 signature. 62 92 IPR000589 GO:0003735|GO:0005840|GO:0006412
Dod08g1559 104 Gene3D - 47 104 - -
Dod08g1559 104 SUPERFAMILY S15/NS1 RNA-binding domain 30 103 IPR009068 -
Dod08g1559 104 Pfam Ribosomal protein S15 39 98 IPR000589 GO:0003735|GO:0005840|GO:0006412
Dod08g1559 104 PANTHER RIBOSOMAL PROTEIN S15P/S13E 12 104 IPR023029 -
Dod08g1559 104 PANTHER 40S RIBOSOMAL PROTEIN S13 12 104 - -
Dod08g1559 104 Gene3D - 9 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1559 Dod-Chr8 35620721 35621349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1559 13 104 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 90.217 1.24e-56 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1559 K02953 - jre:108981103 173.711