Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1541 ATGGATGGTGACCGGAAGATCCCTGCTCCATCTCCATCGGATGGGAACACTGATGGTGTTCAGAAGATGAGAGCATTGCATGGGAGGACTACTGGCCCCACAAGGCGCTCTACAAAAGGGCATTGGACACCAGAAGAGGATGAGATCTTACGGAAGGCAGTTCAGCGTTTCAAAGGAAAGAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCCTACATAGGTGGCAGAAAGTCTTAAATCCTGAACTCGTCAAAGGTCCTTGGTCTAAAGAGGAAGATGAAATAATTATTGACTTGGTGAACAAATATGGGCCTAAAAAGTGGTCTACTATCGCACAACATTTACCTGGACGTATTGGGAAGCAGTGTCGAGAAAGGTGGCATAATCATCTTAACCCTGCTATAAACAAGGAAGCATGGACACAGGACGAGGAGTTGACCCTAATCCGTGCTCATCAGATTTATGGAAACAGATGGGCCGAATTAACGAAGTTCTTGCCTGGGAGGACAGACAATGCTATTAAAAACCATTGGCACAGTTCTGTCAAAAAGAAATTGGATTCTTACCTGGCATCAGGCTTGCTTACTCAGTTTCAGTCTGTACCACACGTTGGCAATCCAAATCATCCAACAGTTTTAACCTCTTCTAGGATCATGCAGTATAGTGGAGATGACAATTGTTCTAAGAGGACTGAAGGAGAGGAAGTTTCAGACTGCAGCCAAGAATCAGCTAATCCTGGTCACTTCCCATCTGCTAGAAAGATGAGTAATGTTGACCTACAAACTAGAGAGGAATATAGGCCAAATGAAGAATCTAGTCTAGGGAAGGACCATAGTCTTAGTCAAGCATCCTGTTCAGAGCCATATTACATTTCTCTTGATGATATGAATATATGCATCCCAGACATTGCTTGCGATGATGATTGCTCTTATCAATTCACTGAGCAGCAATGCTCACATGAACATGGAGATTCCATAAGTGTGGATTGCCAGTTTAGTTGTGTAGATGGTAGTGAAATCCGTGATATGGTAAATGTTCCAGTTCAGACTCCAGTGGGGTTTGGTGTTTCAACTTCCATGGGACCTTCAGCTATGAATTCTGTTAAACCAGATCACATGTTGATATCTGATGAAGAATGCTGCAGATTCCTATTTTCAGAGGCAGTAAATGATGGGTGCTTTTCCTCTGAAGATTGTACTAACGGTGTAGATATGGTTGATTTATATGGATGCAAGTCATTTCTGTGTCAATCTTGTGATATCCAGATACCTGAAACTGGTGGAACCTCAACTTTGCAGCTGACTTGTCCTCATTGTTCTAACAAGTCTAAAATACCTTCATCATCTCAATCTGTCCCACCAGTACCTTCTGCTAGTGATGGTAGATTGGTGAGTACTGCCAAGGACAATCAGTTATTCAGGCAAGAGGATCAGAAGTTTGTCTCCAGAGCACCTGATGACTACATTTATGCTAATGGCGAATCCAGTTCTACTTGTATTGATGGTATGGATAGTGCAGCAAAGCAAGAGCCACCAGCTAATCTGAAGGATACTTCAAAATTGGTCCCAATAAATAGTTTTGGCCGTGGATCAAATTCTAAGCTGATTTCTTGTCAAACAGATGTAAAGCCAAACGTGCATTTAGAAAACAAGGATACGGGAGCTCTATGCTATGAATCTCCGCATCTTCTAAGCTTGGATATTCCTTTTTTCAGCTGTGATCTTGTACAATCTGGGAGTGATATTCAGCAGGAATTTAGTCCCCTTGGTACCCGCCAGTTCATGTTGTCTCCTATGGCCTGTTTATCTCCTTTCCGGTTGTGGGACTCACCCTCTCGTGATGATAGTCCAGATGCCTTGTTGAAAAGTGCAGCCAAATTTTTTTCTGGTACACCCTCCATATTAAAGAAACGACACAGAGATTTGTTATCACCACTTTCAGACAAAAGAATTGAAAAGAAACTTGAGACTGACATGACATCCAGCTTGACCAGAAGTTTTTCCAGTTTGGACTTTCTGTTTGATGACAATATGAATCAAGAAGCAGACATGCTTTCTCCATCTTCATTGCAAAAATTGGACTCTGGTGTGTCTGTTGATGATGATAAAGAAAATTGTGGACAGGCTTTTAAAGGGGAACAAATAAAGGAGAAAATTAAATCAGCAACTTTGGACGAAAAATGTTCCAAAAATGGTACTGTTGAAAATAATTCTCAGGGTAAGATTAAGCATCCAGTTGATTATAAGATAAAGAAGATTGATGTTGATGCAGCTGATGAGATTGAACAACAGCCTTCTGGAGTTTTGGTTGAACATGATATGAATGACCTACTGCTGTATTCTCCTGATCAAGTTGGTTCCAAATCAGACAAAGTTATGAATTCAAGTGCTAGAACTCCCAAAAACTTGAGCAATAGGAAGTTAGAAGCAGTCCCAAATTCTGAAAATCCATGCTCAAGTGTTAAATCTCTCTGTGTCCGTGCAAAGGAGCATGAAAAGCTTACAGTTGCGGTCACTTGTGTACCATCTGTCTTTTCATCAGTCACAGGGGAGAATTCAGGGGAACAGACTGGAAATGATGGTGGTTTTGAAACAAGTAGCATATTCGGTGGAACACCTTTCAGGAGAAGCCTTGCATCACCTTCTGCATGGAAATCTCCCTGGTTCATCAACACTTTTCTGCGTAGCCCCAGGATTGATACTGAAATTACAATTGAGGATTTTGGGTATTTCATGAGCCCTGGTGATAGAAGCTATGATGCCATCAGTTGGATGAAACAGATAAGCGAACAAACTGCCACCGCATATGCTAATGGTGAGGAGATTTTGGGAAATGAAACTCCTAAGGCGTTGCCTGAAAATGCATCTGGAAATGACAGGGATGGGGACAAGGAAAAAAATGATCCACACAAACAGCCCGGGAAGCATTCTCAGTCGGCTTCAAGTACTTTGATGGAGCGACGCATGCTTGACTTTAGTGAATGTGGAACACCAGGCAAGGCTGATAACAGCAAATCCACACCTGTGAGCTTCTCAAGCCCTTCTTCGTATTTGTTGAAGGGTTGTAGATAG 3090 0.4188 MDGDRKIPAPSPSDGNTDGVQKMRALHGRTTGPTRRSTKGHWTPEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQDEELTLIRAHQIYGNRWAELTKFLPGRTDNAIKNHWHSSVKKKLDSYLASGLLTQFQSVPHVGNPNHPTVLTSSRIMQYSGDDNCSKRTEGEEVSDCSQESANPGHFPSARKMSNVDLQTREEYRPNEESSLGKDHSLSQASCSEPYYISLDDMNICIPDIACDDDCSYQFTEQQCSHEHGDSISVDCQFSCVDGSEIRDMVNVPVQTPVGFGVSTSMGPSAMNSVKPDHMLISDEECCRFLFSEAVNDGCFSSEDCTNGVDMVDLYGCKSFLCQSCDIQIPETGGTSTLQLTCPHCSNKSKIPSSSQSVPPVPSASDGRLVSTAKDNQLFRQEDQKFVSRAPDDYIYANGESSSTCIDGMDSAAKQEPPANLKDTSKLVPINSFGRGSNSKLISCQTDVKPNVHLENKDTGALCYESPHLLSLDIPFFSCDLVQSGSDIQQEFSPLGTRQFMLSPMACLSPFRLWDSPSRDDSPDALLKSAAKFFSGTPSILKKRHRDLLSPLSDKRIEKKLETDMTSSLTRSFSSLDFLFDDNMNQEADMLSPSSLQKLDSGVSVDDDKENCGQAFKGEQIKEKIKSATLDEKCSKNGTVENNSQGKIKHPVDYKIKKIDVDAADEIEQQPSGVLVEHDMNDLLLYSPDQVGSKSDKVMNSSARTPKNLSNRKLEAVPNSENPCSSVKSLCVRAKEHEKLTVAVTCVPSVFSSVTGENSGEQTGNDGGFETSSIFGGTPFRRSLASPSAWKSPWFINTFLRSPRIDTEITIEDFGYFMSPGDRSYDAISWMKQISEQTATAYANGEEILGNETPKALPENASGNDRDGDKEKNDPHKQPGKHSQSASSTLMERRMLDFSECGTPGKADNSKSTPVSFSSPSSYLLKGCR* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1541 1029 Gene3D - 38 90 - -
Dod08g1541 1029 MobiDBLite consensus disorder prediction 949 1029 - -
Dod08g1541 1029 MobiDBLite consensus disorder prediction 449 469 - -
Dod08g1541 1029 Gene3D - 144 203 - -
Dod08g1541 1029 SUPERFAMILY Homeodomain-like 88 184 IPR009057 -
Dod08g1541 1029 ProSiteProfiles Myb-like domain profile. 138 188 IPR001005 -
Dod08g1541 1029 MobiDBLite consensus disorder prediction 1 43 - -
Dod08g1541 1029 SUPERFAMILY Homeodomain-like 37 99 IPR009057 -
Dod08g1541 1029 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 85 IPR017930 -
Dod08g1541 1029 MobiDBLite consensus disorder prediction 229 263 - -
Dod08g1541 1029 CDD SANT 42 85 IPR001005 -
Dod08g1541 1029 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 141 IPR017930 -
Dod08g1541 1029 MobiDBLite consensus disorder prediction 962 979 - -
Dod08g1541 1029 ProSiteProfiles Myb-like domain profile. 86 137 IPR001005 -
Dod08g1541 1029 PANTHER MYB PROTEIN-RELATED 9 1028 - -
Dod08g1541 1029 CDD SANT 145 185 IPR001005 -
Dod08g1541 1029 MobiDBLite consensus disorder prediction 1005 1023 - -
Dod08g1541 1029 Pfam Myb-like DNA-binding domain 143 185 IPR001005 -
Dod08g1541 1029 Pfam Myb-like DNA-binding domain 39 85 IPR001005 -
Dod08g1541 1029 Pfam Myb-like DNA-binding domain 91 137 IPR001005 -
Dod08g1541 1029 CDD SANT 93 137 IPR001005 -
Dod08g1541 1029 ProSiteProfiles Myb-like domain profile. 34 85 IPR001005 -
Dod08g1541 1029 Gene3D - 91 142 - -
Dod08g1541 1029 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 192 IPR017930 -
Dod08g1541 1029 MobiDBLite consensus disorder prediction 793 809 - -
Dod08g1541 1029 SMART sant 38 87 IPR001005 -
Dod08g1541 1029 SMART sant 142 190 IPR001005 -
Dod08g1541 1029 SMART sant 90 139 IPR001005 -
Dod08g1541 1029 PANTHER TRANSCRIPTION REPRESSOR MYB5 9 1028 - -
Dod08g1541 1029 MobiDBLite consensus disorder prediction 787 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1541 Dod-Chr8 34930291 34936546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1541 23 1029 MYB Transcription Factor Family AT4G32730 44.880 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod08g1541 Myb_DNA-binding 6.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1541 - K09420 aprc:113848458 1412.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1541 08 34930291 34936546 Dod08g1541 08 34930291 34936546 ECH
Dod08g1541 08 34930291 34936546 Dod09g1078 09 31456181 31461475 PCT