Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1540 ATGGCACTGAAGTTTCTGAACAAGAAAGGATGGCACACGGGGAGCCTGAGGAACATTGAGAACATCTGGAAGGAAGAGCAAAAGCACAAGGCCAAGCAAAAGAAGCTGGAAGAGTTCTGCAAGCAGATCCAAGAAGAGCAGAAAGCTGGCCTCATCCTTGCCCATGAGAGGTTGGATTTGTTGTACGATTCGGGTTTATCCGTTGGAAGGAATTCCAATTCCGAAGGGTTCAAGTCACTCAAAGCATTTCCCAAACCCGATACTAGTGCTTCAATAGAAGCACCTTCTTCCTCCTCTGCGTCTGCTTCTAATGGAGCGAATATGCCTGGAGCCTTGTTTCAAAACAAGCCTCAATCTGCTAATGATGCTTGGAGGAAGCCCCATTTTGACCCTTTGCTCATGATTTGTCAGCATGAGCAAGAGGCCCTTGCAAAGATAAAAAAACAACCCTATCAAGATGCTGGATTGTTATGTTTTAAACCTAGAAGTTATGAACTACTTATTCTCTCAATTAGCTGGAAGGACTACATACACGGTGAGAAGGGTAGGAGGATTAGGGAGTTAACCTCTATGGTGCAGAAGAGGTTCAAGTTCCTTGAGAATAGTGTGGAACTTTATGCTGAGAAGGCAAAGTCTCTTCGCTACAAGCTCCTCGGTGGTCTTGCTGTGGAGGTCATTGTTAGTGGAAAATTGAGGGCCCAGAGAGCCAAATCCATGAAGTTCAAGGATGACTATATGATTTCTTCTGGCCAACTAGTCAAGGATTACATTATCTCTATAATGAGTCATGTCCTGCTTAGACAGGGTGTTCTAGGTATTAAGGTCAAGATCATGCTTGATTTGGATCCTAAAGGGAAGCAATGTCCCAAAATTCCCCTCCCTAATCTTGTTACAATCCACCCACCGAAGGAGGAGGAAGATCACATCCGGCCTCCTATTGTTCTGTCAAGTGATATTGAGGTTCTTGTGGCTTAA 975 0.4451 MALKFLNKKGWHTGSLRNIENIWKEEQKHKAKQKKLEEFCKQIQEEQKAGLILAHERLDLLYDSGLSVGRNSNSEGFKSLKAFPKPDTSASIEAPSSSSASASNGANMPGALFQNKPQSANDAWRKPHFDPLLMICQHEQEALAKIKKQPYQDAGLLCFKPRSYELLILSISWKDYIHGEKGRRIRELTSMVQKRFKFLENSVELYAEKAKSLRYKLLGGLAVEVIVSGKLRAQRAKSMKFKDDYMISSGQLVKDYIISIMSHVLLRQGVLGIKVKIMLDLDPKGKQCPKIPLPNLVTIHPPKEEEDHIRPPIVLSSDIEVLVA* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1540 324 MobiDBLite consensus disorder prediction 90 117 - -
Dod08g1540 324 Coils Coil 29 49 - -
Dod08g1540 324 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 170 223 - -
Dod08g1540 324 SUPERFAMILY Ribosomal protein S3 C-terminal domain 221 279 IPR036419 -
Dod08g1540 324 MobiDBLite consensus disorder prediction 88 117 - -
Dod08g1540 324 Gene3D - 217 308 IPR036419 -
Dod08g1540 324 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 167 212 IPR009019 GO:0003723
Dod08g1540 324 Pfam Ribosomal protein S3, C-terminal domain 223 277 IPR001351 GO:0003735|GO:0006412
Dod08g1540 324 SMART Cir_N_3 10 46 IPR019339 -
Dod08g1540 324 Pfam N-terminal domain of CBF1 interacting co-repressor CIR 11 46 IPR019339 -
Dod08g1540 324 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 223 322 - -
Dod08g1540 324 Pfam Pre-mRNA splicing factor 55 150 IPR022209 -
Dod08g1540 324 PANTHER RIBOSOMAL PROTEIN S3, PUTATIVE-RELATED 223 322 - -
Dod08g1540 324 Gene3D - 161 210 IPR015946 -
Dod08g1540 324 PANTHER RIBOSOMAL PROTEIN S3, PUTATIVE-RELATED 170 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1540 Dod-Chr8 34884531 34892303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1540 161 316 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 57.527 1.90e-60 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1540 K02985 - gmx:100808705 216.853