Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1507 ATGGCTTCTTCCTCGACATCCTCCGTGTCACTCAGTCGAAGAAGGACTCACCCTCCCAAACCCACTCCGCCCACGTTCACGGGCCTCGGCGACGAAGACGACGTCAGCTGCAAGCGATGCGGCTCCGGCGATTCCCCCGCCGAGTTGCTCCTGTGCGACAGATGCGACCGAGGGTACCACATTTTCTGCCTCAGACCCATCCTTCCTTCAGTACCCAAAGGCTCTTGGTTCTGCCCCTCCTGCTCCGACAAAAACAACAAAAGACCCAAGTCTTTTCCTCTGATTCAGACTAAAATCATTGACTTCTTCCGAATCAAACGGTCTTCAGAGGAACCTCTAATGTCAAGTCAAGATGCTAGGAAGAAGCGGAAGCGGGGTAGCAGCTTGGTGGTGTCGAAGAAGAAGAGGAAATTGCTGCCGTTCGTGCCGAGTGAGGATCCTAAGAGGAGATTAGAACAGATGGCATCGCTGGCGACGGCACTGACGGCAACCAAAACAGTGTTCAGCAATGAGCTTACTTACATGCCTGGAATGGCACCGAGGTCTGCTAATTGCCCTGCTTTGGAGCGTGGTGGGATGCAGGTCTTATCGAAAGAAGATACTGAGACTTTGAACTTATGCAGAACTATGATGAAAAGAGGAGAATGCCCACCCCTCATGGTTGTTTTTGATCCTCTAGAAGGCTTCACTGTTGAGGCCGATAAATACATAAGAGATTTGACAATAATCACAGAATATGTTGGGGATGTGGACTTTTTACAGAATCGGGAAAATGATGATGGTGATAGCATGATGACACTTCTTTCGGCTTCTGATCCTTCCCAAACGCTTGTCATCTGTCCAGATAAACGTAGCAACATAGCACGTTTCATTAATGGCATCAATAATCACACACCAGAAGGAAAAAAGAAGCAGAACATGAAGTGCGTGAGATTTGATGTTAATGGTGAATGTCGGGTTCTCTTAATTGCCACCAGGGATATAACAAAAGGGGAAAGATTGTACTATGACTACAATGGATTAGAACAAGAATATCCAACTGAACATTTTGTCTAA 1056 0.4725 MASSSTSSVSLSRRRTHPPKPTPPTFTGLGDEDDVSCKRCGSGDSPAELLLCDRCDRGYHIFCLRPILPSVPKGSWFCPSCSDKNNKRPKSFPLIQTKIIDFFRIKRSSEEPLMSSQDARKKRKRGSSLVVSKKKRKLLPFVPSEDPKRRLEQMASLATALTATKTVFSNELTYMPGMAPRSANCPALERGGMQVLSKEDTETLNLCRTMMKRGECPPLMVVFDPLEGFTVEADKYIRDLTIITEYVGDVDFLQNRENDDGDSMMTLLSASDPSQTLVICPDKRSNIARFINGINNHTPEGKKKQNMKCVRFDVNGECRVLLIATRDITKGERLYYDYNGLEQEYPTEHFV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1507 351 Pfam PHD-finger 37 83 IPR019787 -
Dod08g1507 351 MobiDBLite consensus disorder prediction 1 30 - -
Dod08g1507 351 CDD PHD_RSF1 37 81 - -
Dod08g1507 351 MobiDBLite consensus disorder prediction 1 15 - -
Dod08g1507 351 SUPERFAMILY SET domain 207 339 IPR046341 -
Dod08g1507 351 Gene3D SET domain 123 351 IPR046341 -
Dod08g1507 351 ProSitePatterns Zinc finger PHD-type signature. 37 81 IPR019786 -
Dod08g1507 351 ProSiteProfiles SET domain profile. 217 339 IPR001214 GO:0005515
Dod08g1507 351 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 10 348 - -
Dod08g1507 351 SMART PHD_3 36 82 IPR001965 -
Dod08g1507 351 Pfam SET domain 58 339 IPR001214 GO:0005515
Dod08g1507 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 100 IPR013083 -
Dod08g1507 351 ProSiteProfiles Zinc finger PHD-type profile. 34 84 IPR019787 -
Dod08g1507 351 SUPERFAMILY FYVE/PHD zinc finger 29 89 IPR011011 -
Dod08g1507 351 CDD SET_ATXR5_6-like 214 351 - -
Dod08g1507 351 PANTHER HISTONE ACETYLTRANSFERASE 10 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1507 Dod-Chr8 31934849 31937511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1507 33 81 C2H2 Transcription Factor Family AT3G01460 48.980 8.77e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod08g1507 SET 4.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1507 K24406 - gmx:100775247 532.332