Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1501 ATGACTCGAAATAAGGTGGACCTCACATACATAGTGAATGATTCAAAGAGGAGAGCAGCATTCAACAAAAGAAAGAGTGGTCTGATGAAGAAGGTTGAAGAGATTAGCGTTCTTTGTGGGATAGAAGCCTGTGCTATTATTTATGCTCCTAATGAACCTCAGCCAGAGGTTTGGCCATCCCCTTATGAGGTTGTAAAGGTGATATCTAGGTTCAGGAGAATACCTGAAATGGAACAAAATAAAAAGATGATGACTCAAGAGATCTTCTTAAATCAAAGGATTCAAAAGACCCAAAAGCAAATAACAAAACAAAGCAAAGATAATCGAAAGAAAGAGATGAACAACCTCATCTTCCAGTGCTTGAGTAATGGTATTGTCATGGACAATATCAAGATGAATGATCTTGATGATCTCTTCTGGATGATTGATCAGAACCTCGATGAAATTAATCGGAAGATCAGTAAGATTGACGGCCAAGAGGGTACTTCAAATGGAGAAGTATATGTCAATGAAGAGCAACCACAAGTGGAAGTTATGAAAAAGCAATTTTGCCCTGCGGACAATATCATCGATGGCGGTGAGGGTCAATAA 591 0.3875 MTRNKVDLTYIVNDSKRRAAFNKRKSGLMKKVEEISVLCGIEACAIIYAPNEPQPEVWPSPYEVVKVISRFRRIPEMEQNKKMMTQEIFLNQRIQKTQKQITKQSKDNRKKEMNNLIFQCLSNGIVMDNIKMNDLDDLFWMIDQNLDEINRKISKIDGQEGTSNGEVYVNEEQPQVEVMKKQFCPADNIIDGGEGQ* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1501 196 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod08g1501 196 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod08g1501 196 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod08g1501 196 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Dod08g1501 196 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Dod08g1501 196 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 183 - -
Dod08g1501 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Dod08g1501 196 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Dod08g1501 196 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod08g1501 196 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 183 - -
Dod08g1501 196 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1501 Dod-Chr8 31467641 31468231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1501 1 166 Type I MADS-box Gene Family AT5G48670 53.614 2.42e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod08g1501 SRF-TF 2.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1501 - - aip:107644294 218.779