Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1480 ATGAGAAATATCATCTGTGACTATCTATTTAAAGACGAGTTGCTCGTGTTCATGACGGTGCTTCCTTTCATCTTCAATGCTCAAGCCCAGGACAATGAGTCACAGACCACGCCAGATGTGCCTCAACCTGTCCGTCCAAGCAAGGTGGTTGTATCAGTGGTCCTATCCATAGTCTTAGCTATAATTTGTTTCTTAATTGCCTATTTAAGGTTCCATAGAACAAGCCGTCTTCAATTTGTGCACAGAAGTAGCCATGACCTACCAAATTTTCATAGGCTTAATCGGTCAAGGCTCTCAGGGATTGACAGACAAGTAATTGAAACACTCCCAGTTTTCAAGTTTTCTTCCCTTAAAGGATCCAAGGAAGGCCTAGAGTGTACCGTTTGTCTGTCGCAGTTCGGGGATACTGAGATTCTTAGACTGCTGCCAAAGTGCAAGCATGCTTTTCATATGAATTGCATTGACAAGTGGCTTGAAAGTCAAGCAAGTTGCCCTCTTTGTAGGAGCAAGGTTGACCCTGGAGACATCTTGAACTTCACTAACTCAATCAGCACAAGGTTCCTGCGAGTTCCTTCGAACTTAACAGATGACGCCAATATCGAAATCTTTGTCCAGAGGGAGCCCTCCCATCGAGGGTCATCAAGATTTAGCATTGGAAGCAGCTTTTGGAATATGGGGAAGTGGAACAAAGAAGAATTGCTCATTGATCAAGAAGGTGGTAGCACAAGTACTAATTGGCAACTCGTGCACAAGTTAAACCACCAAATTGTGATCTCTGGTGTTGTTACAAGGAGCAGGTGGAGTGATCTTAATTCTTCAGACCTGCTATTTTTGAATAGTGAGATGATTAATGAATTGTCAAGCAGAAGATTCTCTCCCTCGGAATATGTAAACAATAGAAGGTTTCATGGAAGTTCAAGCCTTTCCACTACTTCCAATGAGGATGCTCTAATTAATCAGGCCGACAAGAGATCGATGTCTGAGATTGTTCATGTTCCAAGGCTTGTGGAAATGAGCAAGCAGAGTAGAAATAAAGAAACCTTGGCGTCTAGTGGGAATGATGGGAGGGAAGAGAGGTTGAGAAGAATTTGGTTACCAATTGCTCAGAGAACAGTCCAGTGGCTTGCAAGACAAGAAAGAAACTCAAGACAATGA 1155 0.4286 MRNIICDYLFKDELLVFMTVLPFIFNAQAQDNESQTTPDVPQPVRPSKVVVSVVLSIVLAIICFLIAYLRFHRTSRLQFVHRSSHDLPNFHRLNRSRLSGIDRQVIETLPVFKFSSLKGSKEGLECTVCLSQFGDTEILRLLPKCKHAFHMNCIDKWLESQASCPLCRSKVDPGDILNFTNSISTRFLRVPSNLTDDANIEIFVQREPSHRGSSRFSIGSSFWNMGKWNKEELLIDQEGGSTSTNWQLVHKLNHQIVISGVVTRSRWSDLNSSDLLFLNSEMINELSSRRFSPSEYVNNRRFHGSSSLSTTSNEDALINQADKRSMSEIVHVPRLVEMSKQSRNKETLASSGNDGREERLRRIWLPIAQRTVQWLARQERNSRQ* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1480 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 383 - -
Dod08g1480 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 174 IPR013083 -
Dod08g1480 384 Pfam Ring finger domain 125 168 IPR001841 -
Dod08g1480 384 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Dod08g1480 384 PANTHER RING-H2 FINGER PROTEIN ATL4J 21 383 - -
Dod08g1480 384 SUPERFAMILY RING/U-box 103 173 - -
Dod08g1480 384 CDD RING-H2_PA-TM-RING 125 168 - -
Dod08g1480 384 SMART ring_2 126 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1480 Dod-Chr8 30598777 30599931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1480 45 382 C3H Transcription Factor Family AT2G20030 41.761 1.94e-78 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1480 K10664 - gmx:100803881 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g1103 09 31697899 31698552 Dod08g1480 08 30598777 30599931 PCT