Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1479 ATGGACTTGGACAGCATTGATTGTGTTTCATCCTCTGATGGAATGGATGAGGATGAGATCCAACACCATAGCCTTCATCCTCATCCTCATCCTCATCCTCATCCCCATCACCACTCAGAGTTCTCTTCCTCGAAGGCACGCAATGGAAGCGCTAACAACAACGGCGTTGTGGGCCCCACGGCCATTGCTCCTGCAACCAGCGTCCACGAGTTGCTAGAATGCCCCGTTTGCACCAATTCAATGTATCCCCCAATTCATCAGTGCCACAATGGACACACATTGTGTTCTACATGTAAAACAAGGGTGCACAATCGATGTCCCACTTGCCGACAAGAGCTTGGAGATATTAGGTGTCTGGCGCTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACTCCCTTGGATGTCCAGAAATATTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTTCAGACCATATAATTGTCCTTATGCTGGGTCAGAGTGCTCTGTTGCTGGGGACATTCCCTTCCTCGTTGCACATCTGAGGGATGATCACAAGGTGGACATGCACACTGGATGCACATTCAACCATCGTTACGTAAAATCAAATCCCCGTGAAGTAGAGAATGCAACTTGGATGCTTACAGTATTTCATTGTTTTGGGCAATACTTCTGCCTTCACTTTGAAGCTTTCCAGCTTGGCATGGCCCCAGTGTACATGGCATTCCTTCGTTTTATGGGTGATGAGAACGAGGCTCGGAACTATAGCTACAGCCTTGAGGTTGGGGCAAATGGCAGGAAACTCATTTGGGAAGGTACGCCACGAAGTATTCGCGATAGCCACCGGAAAGTCAGGGACAGTCATGACGGTCTCATTATCCAACGAAATATGGCCCTATTTTTCTCTGGTGGAGATAGGAAGGAGCTAAAACTCAGAGTTACAGGAAGAATATGGAAGGAACAACAGAATCCCGAAGCTGGGGTGTGCATACCAAATCTTTGTAGCTGA 1011 0.4748 MDLDSIDCVSSSDGMDEDEIQHHSLHPHPHPHPHPHHHSEFSSSKARNGSANNNGVVGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSVAGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPEAGVCIPNLCS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1479 336 ProSiteProfiles Zinc finger RING-type profile. 74 110 IPR001841 -
Dod08g1479 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 126 IPR013083 -
Dod08g1479 336 SUPERFAMILY TRAF domain-like 127 319 - -
Dod08g1479 336 CDD RING-HC_SIAHs 72 110 - -
Dod08g1479 336 CDD Sina 188 316 - -
Dod08g1479 336 SUPERFAMILY RING/U-box 65 116 - -
Dod08g1479 336 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 327 - -
Dod08g1479 336 MobiDBLite consensus disorder prediction 44 58 - -
Dod08g1479 336 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 181 315 IPR008974 GO:0005515
Dod08g1479 336 ProSiteProfiles Zinc finger SIAH-type profile. 127 187 IPR013010 GO:0008270
Dod08g1479 336 MobiDBLite consensus disorder prediction 1 58 - -
Dod08g1479 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 180 IPR013083 -
Dod08g1479 336 Pfam Seven in absentia protein family 116 315 IPR018121 GO:0005737|GO:0006511|GO:0007275
Dod08g1479 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1479 Dod-Chr8 30568853 30574542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1479 40 322 C3H Transcription Factor Family AT2G41980 76.325 1.15e-162 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1479 K04506 - mnt:21390230 644.81