Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1476 ATGAGGGATTTGGCGGAGCTTTTGTCGAAGTTGAATCCCATGGCTGAGGAGTTTGTGCCTCCGTCGCTTGCAAAGAGTCATGGGTACTTGCCTGCTGGTGGTGGTGGGTACGGGTACACTAACGGTTTTCTACTCCCGGGTAATTTTGGCAATGCCAATGGACACGCCAACAGAAGGAGAAAGAATGGCTACAGTCAGGGGAAGCAAAGAGCGAATCATAGAATAGAAATGGAGAGAAGGGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAACAGGTCACTGAAGAGCAGCTGGCAACCCTCTTTCTTAATTGTGGCCAGGTTGTTGATTGCCGTGTATGCGGGGATCCAAATTCTATTCTTCGTTTTGCCTTCATCGAGTTTACAGATGAAGATGGTGCAAGAGCTGCTTTGAACTTGTCTGGCACCATGCTTGGTTATTATCCAGTGAGAGTGCTGCCTTCAAAAACTGCCATAGCGCCAGTTAATCCTTCATATTTGCCCCAGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACTATTTATTGCACAAATATTGACAAAAAGGTTACTCAAGCTGATGTTAAACTCTTCTTTGAATCTCTTTGTGGAGAGGTTCACCGTTTGAGGCTTCTTGGGGATTACCATCACTCGACTCGAATTGCATTTGTGGAGTTCACAATAGCTGAAAGTGCAATTGCAGCCCTGAACTGTAGTGGTGTGATTTTGGGTTCACTGCCTATAAGGGTAAGTCCATCGAAGACACCAGTCCGGTCTCGCGCTCCTCGTACTTCAATGCATTGA 816 0.4596 MRDLAELLSKLNPMAEEFVPPSLAKSHGYLPAGGGGYGYTNGFLLPGNFGNANGHANRRRKNGYSQGKQRANHRIEMERREEMIRRTVYVSDIDQQVTEEQLATLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSYLPQSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVHRLRLLGDYHHSTRIAFVEFTIAESAIAALNCSGVILGSLPIRVSPSKTPVRSRAPRTSMH* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1476 271 SUPERFAMILY RNA-binding domain, RBD 170 265 IPR035979 GO:0003676
Dod08g1476 271 SMART rrm1_1 87 157 IPR000504 GO:0003723
Dod08g1476 271 SMART rrm1_1 184 255 IPR000504 GO:0003723
Dod08g1476 271 CDD RRM1_CID8_like 84 163 IPR034823 -
Dod08g1476 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 259 IPR000504 GO:0003723
Dod08g1476 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 150 IPR000504 GO:0003723
Dod08g1476 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 252 IPR000504 GO:0003723
Dod08g1476 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 161 IPR000504 GO:0003723
Dod08g1476 271 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 271 - -
Dod08g1476 271 SUPERFAMILY RNA-binding domain, RBD 58 162 IPR035979 GO:0003676
Dod08g1476 271 CDD RRM2_CID8_like 179 260 IPR034825 -
Dod08g1476 271 Gene3D - 49 163 IPR012677 -
Dod08g1476 271 Gene3D - 167 267 IPR012677 -
Dod08g1476 271 Pfam Ataxin-2 C-terminal region 8 22 IPR009818 -
Dod08g1476 271 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1476 Dod-Chr8 30517113 30526379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1476 85 254 Eukaryotic Initiation Factors Gene Family AT1G34140 24.138 7.16e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1476 - - aip:107622933 471.085