Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1460 ATGAATACTCAGCAAGAGAAGTTTGTTAGGTTTCATGATTGGAATTCAGACAAGGGTTCTGAGAGCAATTATCCTGTGATTAACAAAACACACTCGCAAAGAATTTTATCTGTAATGAATTCGTTCTCTGTGAAGTTTCAAAGGGGATTGGAATCTGGTTCTGAGAGGATACAGAGACTCAGTGGATCATTCAAATCTTTTCCCTATAGCAGTGTTCTTTCTTGTAGCTTTAGTTCTAGAAAGAAAATGCTTGATCCGCAGGGTCCATTCCTTCAAAAATGGAACAAGATATTTGTACTGTTATGTGTTATTGCAGTATCACTAGACCCTTTGTTCTTTTATGTCCCTGTGATTGACGATGAGAAGAAATGTCTTTCACTGGACAGCAAGATGGAGATTACAGCAACTGTTTTAAGATCCTTTTTTGATATCTTTTATCTAATCCGCATGTTTTTCCAGTTTCGTACTGGATTCATTGCTCCGTCTTCTCGAGTGTTTGGAAGAGGCGTTTTAGTTGAAGATTCTTGGGCAATAGCAAAGCGGTATCTGTCATCATATTTCTTAATTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTGATTCTAATTATCATTCCGGCAATGAGCGGTTATAAATCACTCAATACAAAGAACTTGCTGAAATTTGTTGTTTTCTTGCAATATGTGCCTCGAGTGTTACGAATAATTCCATTATATAAAGAAGTTACAAGGACCTCTGGCATTCTTGCTGAAACAGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTTTACATGCTTGCAAGCCATGTTGTTGGTGCCTTCTGGTACTTGTTTTCTATAGAACGAGAAACCACATGCTGGCAAGAAGCTTGTCGAAGTAATAGAACATGTGATAAAGCGGACATGTATTGTAACAATCATCGGGGAGGGTTGAGCACAATTTCAGCAATCCTTAATGCTTCTTGCCCAATACAGGAGGCAAACAAAACGATGTTTGATTTTGGAATATTCCTTGATGCCCTTCAATCTGGTGTTGTTGAGTCAAGAGACTTCCCTCAAAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAAAAGTTTGAGTTCTCTTGGACAGAACCTGACAACAAGTACATTTGTATGGGAAATCTGCTTTGCAGTTTTCATTTCCATCGCTGGTTTGGTGTTATTTTCATTCCTTATTGGAAATATGCAGACATATTTGCAATCAACAACAACGAGATTAGAGGAGATGAGAGTAAAAAGGAGAGATGCAGAACAGTGGATGTCTCATCGATTGCTACATGATGGCCTGAGGGAGCGAATAAGGCGATATGAACAGTACAAATGGCAAGAAACCGGAGGTGTTGATGAAGACAATTTGATTCGTAATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGACATCTTTGTTTGGCTTTGCTGATGAGAGTGCCCATGTTTGAGGAAATGGATGAGCAACTTTTGGATGCCATGTGTGATCGTCTCAAGCCAGTGCTTTACACAGAACAAAGCTACATTGTCAGGGAAGGAGACCCTGTTGATGAGATGCTCTTCATAATGCGAGGCAAGCTATTGACAATGACAACTAATGGTGGACGAACAGGCTTCTTTAACTCCGAGTTCCTCAAGGCCGGTGACTTTTGTGGGGAGGAGCTTCTCACATGGGCTTTAGATCCTCATTCCTCATCCAACCTTCCCATCTCAACCAGGACAGTTCAAACACTTTCAGAAGTAGAAGCATTTGCTCTAAAAGCTGATGACTTGAAGTTTGTGGCATCTCAATTTCGGCGCCTCCACAGCAAGCAATTACGCCACACTTTCAGGTTCTACTCGCAACAGTGGCGGACGTGGGCTGCATGTTTCATTCAAGCAGCCTGGCGGCGCTATAGTAAGAAGAAGCTTGAGGAATCTCTGGTGGAAGAAGAGAACAGGCTGCACTATGCATTGGCCAAGGTAGGTGGTAGCTCACCTAGTCTAGGTGCCACCATATATGCTTCCAGATTTGCTGCCAATGCACTTAGATTGTTACGCCGTAATGGCACGAGGAAGACGAGGGTACCAGAGAGGATACCTGCCATGCTGCTTCAGAAGCCTGCAGAACCTGATTTTACTGCCGAAGGCTAG 2148 0.4223 MNTQQEKFVRFHDWNSDKGSESNYPVINKTHSQRILSVMNSFSVKFQRGLESGSERIQRLSGSFKSFPYSSVLSCSFSSRKKMLDPQGPFLQKWNKIFVLLCVIAVSLDPLFFYVPVIDDEKKCLSLDSKMEITATVLRSFFDIFYLIRMFFQFRTGFIAPSSRVFGRGVLVEDSWAIAKRYLSSYFLIDILAVLPLPQVVILIIIPAMSGYKSLNTKNLLKFVVFLQYVPRVLRIIPLYKEVTRTSGILAETAWAGAAFNLFLYMLASHVVGAFWYLFSIERETTCWQEACRSNRTCDKADMYCNNHRGGLSTISAILNASCPIQEANKTMFDFGIFLDALQSGVVESRDFPQKFFYCFWWGLKSLSSLGQNLTTSTFVWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLHDGLRERIRRYEQYKWQETGGVDEDNLIRNLPKDLRRDIKRHLCLALLMRVPMFEEMDEQLLDAMCDRLKPVLYTEQSYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEFLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLVEEENRLHYALAKVGGSSPSLGATIYASRFAANALRLLRRNGTRKTRVPERIPAMLLQKPAEPDFTAEG* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1460 715 SUPERFAMILY cAMP-binding domain-like 416 609 IPR018490 -
Dod08g1460 715 Gene3D Helix hairpin bin 413 478 - -
Dod08g1460 715 ProSiteProfiles cAMP/cGMP binding motif profile. 487 571 IPR000595 -
Dod08g1460 715 Pfam Cyclic nucleotide-binding domain 507 598 IPR000595 -
Dod08g1460 715 Gene3D Jelly Rolls 485 605 IPR014710 -
Dod08g1460 715 CDD CAP_ED 487 618 IPR000595 -
Dod08g1460 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 714 - -
Dod08g1460 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 714 - -
Dod08g1460 715 SUPERFAMILY Voltage-gated potassium channels 85 409 - -
Dod08g1460 715 SMART cnmp_10 487 618 IPR000595 -
Dod08g1460 715 Pfam Ion transport protein 94 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dod08g1460 715 Gene3D - 94 411 - -
Dod08g1460 715 Coils Coil 639 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1460 Dod-Chr8 29287990 29294390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1460 1 714 Ion Channels AT5G53130 77.577 0.0 1121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1460 K05391 - gmx:100801032 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1460 08 29287990 29294390 Dod08g1460 08 29287990 29294390 ECH