Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1446 ATGATAATCAAACGGAACCTGAAAACCCAAATGCCGAGTCTGAAACGTAGCAGGCTTGGCGACTCGGCTGCGGGTGAGGGTGACGAGTGCCCTCGGAAGAAAAAGAAGAAAACGACCAACGGGCACTATCCGATAAACCTCCTCGGCGACTTTGCCGCCGGCGTAATTCCCTCAAACTTTCGGGGCTCAGTTGGTTCAGCTGCAGAGTTGCCAGAGGAGAGCTTATCTTCTATGAGCACAGGGAAAGTCTCTTGTTCTCCCGGCCAAGCCGAGTCGAACTCGGAGGCTGGGGCCGAAGATGAGGAAGTCGTCGAAGAGGTGGCAGTTGTCCAAGCAAAGAAGGACAATGTTTCGCGGCCTCCGCTGGTGCGGACGTCGCGGGGCCGAGTTCAGGTGCTGCCTTCGCGGTTCAATGACTCGGTGATGGATGATTGGAGGAAGGATGGTAAGAGTAGCGGTAATTTGGAGGATGAATTTGAGTTTGCTGCGGTGGCAGCGAAGAGTTGTAAAAGGAGGAACGGAGAGAGGAATGGACAGAAGCCTAGGAGGTATGCCACATTGTGTGAGGAGGTGTTGAGTAAGAATTTTGATGCGGGGAAGTGTTTCAGTTCACGCGGATCAATTGCATTGAGGAAGCGTGAGGTGTATGTTGAGGATGTGGGGTTTGTGGAAGTGGAGGAAGTGGATTTAACTGGGAATAATGAGGGAGTTTTGAATGAAGAGGAGCAGCAGGAGGAGGAGAAGAAGAGGAAAGAAGGGTTGTATGGACCAGAAGACTTTTATGCAGGTGATATAGTGTGGGCCAAAGCCAGGAAGAAGGAACCCTTTTGGCCTGCCATTGTCATTGATCCTACAACTCAGGCACCTGAGCTGGTCTTGAGGTCATGTATTGCTGATACCGCTTGTGTGATGTTTCTCGGGTACTCGGGGAATGGAAATGAAAGGGATTATGCATGGGTGAAGTATGGGATGATTTTTCCATTTATGGATTGTGTAGACAGGTTTCAGGGGCAGTCTGAGTTGAGTTACTGTAACCCCTCCGAATTTCAAATGGCAATAGAGGAGGCTTTTTTGGCGGATCAGGGCTTTACAGAGAAGTTGATAGCAGACATAAATGCAGCAGCCGGTAACTCTAGCTACAGTGATTCAGGTATAAAGAGCTTGCATGCGGTCACTGGTTCTAACCAGTATGCTGGGCGTCGCTTTCTGAACAGGGATTTATTTAACAAGAAGAAAGACACACAACAATGTGAAGTATGTGGAATGGACCTTCCTTTCAAAATGTCAAAGAAAACAAAGGATCCGACTCCTATTGGCCAATCCCTTTGTAAAACATGTGCTAGGTTAAAAAAATCAAAACATTATTGTGGCATATGCAAGAAAATTTGGAATCATTCAGATAGTGGAAGCTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCTGAATGTGACAAAATTTCCAGCGACCTTTTCAAGAATCTTGGAGGCACAGATTATTTCTGCCCTGCTTGCAAAGCGAAGTTTGATTTTGAGTTATCTGATTCAGAAAAAGCAATGCCAAAAGTCAAATGGAACAAAAACAGTGGGCAGCTGGTGCTTCCAAAACAGGTCACTGTTCTCTGCAATGGTGTGGAGGGCATATATTTTCCCAGCCAGCATTTAGTTGTGTGCAAGTGTGGTTTTTGTGAGACAGAAAAGCAAGCACTTAGTGAATGGGAACGCCACACAGGTTCCAAATTTAGAAATTGGAGAACAAGTGTTCGGGTGAAAGGCTCCATGCTATCGCTGGAACAATGGATGCTCCAGTTGGCAGAGTTTCACGCTAATGCTGTCGTTACTATCAAACCTAAAAAACCTTCCTTAAAAGAAAGGAAGCAGAAGTTGCTTGCCTTTTTGCAAGAGAAGTATGAACCAGTTTGTGCTAAGTGGACAACAGAACGTTGTGCTATATGCAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCTGAAATTAAACGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACAGATGTTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGACGAGAAGATGGAGCCTGCTTTGGGTATTCTGAGTATTCCATCAAATTCTTTTGTGAAGATATGTGTTATTTGTAAGCAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCGACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTACCGAATGGAGTTGCATTGTTCGGAGAAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTATCACAGGGCTCCCAATCCGGACACTGTTTTGATTATGCAAACCCCTCTTGGGGTCATTTCAACTAGAAGTCTTCTCCAAACTAAGAAAAAATCAGGGTCCAGACTAATCTCTTCAAAAAGAATGAAGGTAGAAGAAACTCCTCCTGAAGAAAACACTGAAGATGAGCCATTCTGTGCTGCTAGGTGCCGTATCTTTCAAAGAACAAACCAAACAAAAAAGAGATCAGCAGCTGAAGCCATTGCTCATCATGTGAGGGGCCATTACCGTCATCCTTTAGATGCAATACAGAAGTTAAATGCTCGCAGAGTGGTAGAGGAGCCTCAGGCATTTTCTTCTTTCAGGGAGCGCCTTTACCACTTACAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCGGGCATTCATGGATGGGGCCTTTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAGTATCGTGGTGAGCAAGTTAGGCGCAGCATTGCAGATCTGAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTATCTGTTTAAGATAAGTGAAGAGGTGGTAGTAGATGCTACCGATAAAGGAAATATAGCACGGCTAATTAACCATTCTTGTATGCCAAATTGCTACGCAAGGATCATGAGTGTGGGTGATGATGAGAGCCGGATTGCACTCATTGCTAAGACTGACGTAGCTGCTGGCGAAGAGCTGACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGTTTATGCAAAGCTCCAAACTGCCGCAAATTCATGAATTAG 3249 0.4497 MIIKRNLKTQMPSLKRSRLGDSAAGEGDECPRKKKKKTTNGHYPINLLGDFAAGVIPSNFRGSVGSAAELPEESLSSMSTGKVSCSPGQAESNSEAGAEDEEVVEEVAVVQAKKDNVSRPPLVRTSRGRVQVLPSRFNDSVMDDWRKDGKSSGNLEDEFEFAAVAAKSCKRRNGERNGQKPRRYATLCEEVLSKNFDAGKCFSSRGSIALRKREVYVEDVGFVEVEEVDLTGNNEGVLNEEEQQEEEKKRKEGLYGPEDFYAGDIVWAKARKKEPFWPAIVIDPTTQAPELVLRSCIADTACVMFLGYSGNGNERDYAWVKYGMIFPFMDCVDRFQGQSELSYCNPSEFQMAIEEAFLADQGFTEKLIADINAAAGNSSYSDSGIKSLHAVTGSNQYAGRRFLNRDLFNKKKDTQQCEVCGMDLPFKMSKKTKDPTPIGQSLCKTCARLKKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSDLFKNLGGTDYFCPACKAKFDFELSDSEKAMPKVKWNKNSGQLVLPKQVTVLCNGVEGIYFPSQHLVVCKCGFCETEKQALSEWERHTGSKFRNWRTSVRVKGSMLSLEQWMLQLAEFHANAVVTIKPKKPSLKERKQKLLAFLQEKYEPVCAKWTTERCAICRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPEIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSEKNGKQTTRMVSYCAYHRAPNPDTVLIMQTPLGVISTRSLLQTKKKSGSRLISSKRMKVEETPPEENTEDEPFCAARCRIFQRTNQTKKRSAAEAIAHHVRGHYRHPLDAIQKLNARRVVEEPQAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIALIAKTDVAAGEELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1446 1082 CDD PHD_ATX3_4_5_like 649 695 IPR042011 -
Dod08g1446 1082 SUPERFAMILY FYVE/PHD zinc finger 648 712 IPR011011 -
Dod08g1446 1082 Gene3D SET domain 834 1082 IPR046341 -
Dod08g1446 1082 MobiDBLite consensus disorder prediction 21 35 - -
Dod08g1446 1082 MobiDBLite consensus disorder prediction 71 101 - -
Dod08g1446 1082 Gene3D - 248 370 - -
Dod08g1446 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 818 IPR013083 -
Dod08g1446 1082 ProSiteProfiles Zinc finger PHD-type profile. 647 698 IPR019787 -
Dod08g1446 1082 Pfam PHD-zinc-finger like domain 703 815 - -
Dod08g1446 1082 MobiDBLite consensus disorder prediction 1 41 - -
Dod08g1446 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 698 IPR013083 -
Dod08g1446 1082 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1082 IPR025780 -
Dod08g1446 1082 SMART set_7 940 1063 IPR001214 GO:0005515
Dod08g1446 1082 ProSiteProfiles PWWP domain profile. 262 331 IPR000313 -
Dod08g1446 1082 ProSitePatterns Zinc finger PHD-type signature. 650 695 IPR019786 -
Dod08g1446 1082 PANTHER PHD FINGER PROTEINS 1 1082 - -
Dod08g1446 1082 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1082 - -
Dod08g1446 1082 SUPERFAMILY FYVE/PHD zinc finger 454 510 IPR011011 -
Dod08g1446 1082 Pfam PWWP domain 263 356 IPR000313 -
Dod08g1446 1082 Pfam SET domain 951 1056 IPR001214 GO:0005515
Dod08g1446 1082 SUPERFAMILY Tudor/PWWP/MBT 255 359 - -
Dod08g1446 1082 ProSiteProfiles Post-SET domain profile. 1066 1082 IPR003616 -
Dod08g1446 1082 Pfam PHD-finger 455 508 IPR019787 -
Dod08g1446 1082 ProSiteProfiles Zinc finger PHD-type profile. 453 509 IPR019787 -
Dod08g1446 1082 SMART PHD_3 455 507 IPR001965 -
Dod08g1446 1082 SMART PHD_3 649 696 IPR001965 -
Dod08g1446 1082 SMART PHD_3 760 816 IPR001965 -
Dod08g1446 1082 ProSiteProfiles SET domain profile. 940 1057 IPR001214 GO:0005515
Dod08g1446 1082 ProSiteProfiles Extended PHD (ePHD) domain profile. 701 816 IPR034732 -
Dod08g1446 1082 SMART PostSET_3 1066 1082 IPR003616 -
Dod08g1446 1082 Pfam PHD-finger 662 696 - -
Dod08g1446 1082 CDD ePHD_ATX3_4_5_like 704 815 IPR041955 -
Dod08g1446 1082 CDD SET_SETD1-like 927 1078 - -
Dod08g1446 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 510 IPR013083 -
Dod08g1446 1082 SUPERFAMILY SET domain 933 1079 IPR046341 -
Dod08g1446 1082 MobiDBLite consensus disorder prediction 71 93 - -
Dod08g1446 1082 CDD PHD_TCF19_like 456 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1446 Dod-Chr8 28224442 28233927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1446 650 815 C2H2 Transcription Factor Family AT3G14740 32.759 5.77e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod08g1446 zf-HC5HC2H_2 3.6e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1446 - - aprc:113853254 1692.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1446 08 28224442 28233927 Dod08g1446 08 28224442 28233927 ECH