Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1421 ATGGAAACTGGGGATGGAACTAGCAATGGCGTTAACTCAGAACATGCTGAGTTGCTGGATCGGTGCTTGAGTTCCAGAGCTGTAAATAAGGGAATGACAATTGCTGATGGGGTTGGTGTTACAGAAGGTAAAGAGGTTTGGCACTGGAAGAATGAAGATGTGAATAACAGAGTGGCAACTGCAGATGGGTTTGGTGTTACTAAAGGGCAATGTGATGGAGGCGAATGTTTTCAGACTTATAAGAGGCGGAAGCATGCTACGATGAGTTACTCAGAAAGCAAAGTTCTGGGTGACAGCAGAAAATGTGTGGAAGCTCCAAGTCACCTATCAAATCAGGCTCTGAAGAAACCATGTGATGTAGCTGTAGGCAATACTTCAAAAGAATTTTCAAATGGACATTGGGGGAATGTTGTACTAAAGCATTTATATCGTTCATTAGGCAATGATAACGGTGGAATAGAGTGGTGCATAAGGAAAGCACTCATGAAGAATCCAAAAACCGCTGCAGATATGGAAACTTCTAAAATTGACAAAGATGGTCAAGAATGCTCTTCGCAGTCAGAGTGGTTCTCTCATAGGTTACAGAGTGAAGCTAATGAGCATGCAAATGTCATGCATGATGGATGTTCTAGTGAATCAGATGGTCGTGGTGTGACTAAGAAGTGTCAGCATGTGTTTTGTAATATCTTAGCCTCTGAAAAATTCAGTTCATTATGTATGGTGCTATCTGAAAATTTTCGAGGAATGAAGCCTGAAAGTGTATTTGACTTTAATGTCATAAACTCAAGGATGAAAGAGCAAGCTTATGAACAATCACCTACACTTTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAGACACTGGAAATGAGATTGTTGCTATTGCCAAGAGCCTCTCCAGCATGTCAAGAGCTTCCTACTGTGAGCATGTGGGAGTTTCTTCAGCACACAGCTCATTTGAAGATGAAAAACAACACAGCTCATTTGAAGATGAAAAACAAGTGTTCTGTAACCAGGCATTGGACTCTGACATGAAACCACAGCAGACAGAAGAATGTGTTGCCAATAAAATTTGCACTTGTAGGCTTTGTGGAGGCAAGGCAGATGGGACAGACTGCTTGATTTGTGATTCATGCGAGGAGATGTACCACGTGTCCTGTATTGGTATTGAGTCTGCTGTGAAAGAAATGCTCGACAAAAGCTGGTTTTGTTCCAATTGTACTGCTGGTGGACTAGGGTCTCCGCATGACAATTGTGTGGTGTGTGAAAGGTTGAATGTCCCAAAGTCCTTGAACAACACTATTGGTACTGTTGGTGTGGAAAGCATACCTATAAATGATGAAACACTACATGAATTGGAAGAGAATTCAAATTGTACTTTTGATGGGATTCAGGTGTCCATGGGTGGGAGAAACTCGACTGATTGCAAAATTTGTGGTGAGGGAGTGGGTGGTGAAAAAATAAAAAAATGTGGTCACTCTTTCTGCCCCAGTAAGTACTACCATGTAAGGTGTTTGTCAAGTAAGCAGCTCGAGTCACATGGTCCCTGTTGGTACTGTCCTTCTTGTTTATGCCGAGTGTGCCTCAAGGATAAAGATGATCATAAGATTGTTCTCTGCGATGGGTGTGACCATGCATACCACATCTATTGCATGGAACCTCAACGAACTTTTATTCCAAGAGGCAAATGGTTCTGCAGAAAATGTGATGCAGGGATCCAAGCAATCCGCCGGGCAAAAAAGGGATACGAGAATGACAAGTGGAGAGCTGTTGAGAATGTTTCAAAACCAAATGATAAGGTTGATAAGAAATGGAAACGAGGACGAGAGTTAGACAAAGATGAAGGAATGGATATGCTTTTAACTGCAGCCAATACTCTTAACTTTGAAGAGAACTTAGCTACAAGCCAGATTGAGTCACAAAGAATAGGAATTTCTTGA 1947 0.4165 METGDGTSNGVNSEHAELLDRCLSSRAVNKGMTIADGVGVTEGKEVWHWKNEDVNNRVATADGFGVTKGQCDGGECFQTYKRRKHATMSYSESKVLGDSRKCVEAPSHLSNQALKKPCDVAVGNTSKEFSNGHWGNVVLKHLYRSLGNDNGGIEWCIRKALMKNPKTAADMETSKIDKDGQECSSQSEWFSHRLQSEANEHANVMHDGCSSESDGRGVTKKCQHVFCNILASEKFSSLCMVLSENFRGMKPESVFDFNVINSRMKEQAYEQSPTLFLSDIQQVWRKLQDTGNEIVAIAKSLSSMSRASYCEHVGVSSAHSSFEDEKQHSSFEDEKQVFCNQALDSDMKPQQTEECVANKICTCRLCGGKADGTDCLICDSCEEMYHVSCIGIESAVKEMLDKSWFCSNCTAGGLGSPHDNCVVCERLNVPKSLNNTIGTVGVESIPINDETLHELEENSNCTFDGIQVSMGGRNSTDCKICGEGVGGEKIKKCGHSFCPSKYYHVRCLSSKQLESHGPCWYCPSCLCRVCLKDKDDHKIVLCDGCDHAYHIYCMEPQRTFIPRGKWFCRKCDAGIQAIRRAKKGYENDKWRAVENVSKPNDKVDKKWKRGRELDKDEGMDMLLTAANTLNFEENLATSQIESQRIGIS* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1421 648 SMART PHD_3 477 526 IPR001965 -
Dod08g1421 648 SMART PHD_3 527 572 IPR001965 -
Dod08g1421 648 SMART PHD_3 362 410 IPR001965 -
Dod08g1421 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 466 577 IPR013083 -
Dod08g1421 648 Gene3D - 252 412 - -
Dod08g1421 648 Pfam PHD-finger 527 572 IPR019787 -
Dod08g1421 648 Pfam PHD-finger 363 410 IPR019787 -
Dod08g1421 648 ProSiteProfiles Zinc finger RING-type profile. 478 525 IPR001841 -
Dod08g1421 648 PANTHER HISTONE ACETYLTRANSFERASE 136 633 - -
Dod08g1421 648 PANTHER D4, ISOFORM A 136 633 - -
Dod08g1421 648 SUPERFAMILY FYVE/PHD zinc finger 352 411 IPR011011 -
Dod08g1421 648 ProSiteProfiles Zinc finger PHD-type profile. 360 412 IPR019787 -
Dod08g1421 648 ProSiteProfiles Zinc finger PHD-type profile. 524 574 IPR019787 -
Dod08g1421 648 SUPERFAMILY FYVE/PHD zinc finger 526 577 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1421 Dod-Chr8 25305419 25323664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1421 526 589 C2H2 Transcription Factor Family AT3G01460 43.750 5.13e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod08g1421 PHD 4.1e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1421 - - gmx:100810450 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1421 08 25305419 25323664 Dod09g1461 09 35949531 35956470 PCT