Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1410 ATGTTGAAGACAAAGGCATTCAACGGCGCGAATGTGTTCATGTCGCGGAACCTAGTGCCGCCGGAGGTATTCGACACACTACACGACGCTCTCAAGGACAACGGTGCGCAAGTGCACCTTTGCTGCGACCCTTCTCGTAATGGCCCCAACGATTACCACGTCATTTCTTGCAGCAAACACGAGAAGTTTGAGGATCTCAAATCCAGGGGCTGCAAATTGCTTGGTCCCAGGTGTGTTCTTTCATGTGCTAAAGAATGTAGGCCATTACCTAAACAAGGGTTCACTTGTTGCCTTGCCATGGATGGTGTCAAAGTTCTTGCATCTGGCTTCAATACCATCGAGAAGGTTAAGATAGAAGAGATAGTGACTGAAATGGGTGGAGTTGTTCATACTAAAGCATCACTGGATTTGAACTTTGTTATTGTGAAAAATGTTTTAGCGGCAAAATACAAGTGGGCTCTGAATATGCTAAAGAAACCAATAGTCACTTATGAATGGTTAAAGCAATGCTCAGATGAGCATCGAGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCACTGGGTTAACAATTTGTGTTACTGCGATTCCAGCAGATAAGCGCAAAGAGATGGAGAAGCTTATTTTACAAAATGGTGGAAAATACTCTGCAGAGTTGACAAAGAAGTGCACTCATTTGATTTCTGATATATCCTTCCCATACGAAGGTGACAAATATAAGGTTGCAAGACGTTGGGGCCACATTCATATTGTGACAAAGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTTAATGAGGAGTCCTACCCAGTTCAGAATGGATCTGTATCTTCACAGAAAGTGGTTAGGGACTTCACTGTGCAACATAGCCCAGAAAAGAATATTGAGAAATTGCAATCTGCAGCATCCACAGCTGCTACAGATGCAAATATGCCAGTTTTTTCTTATGCTGAGTTTGTTGACAAAGATCTGGAAGCTACACCTTCAGAATACATGTCTTCTTTTTCAAATGCTCCTCCATTTGTTAAAGAGGCAAATGCTGAAGCACCTCCAGTGCAACCCAGCATTGAATTGAAGCTTGATGGTGCTGTTGCCAATGATTCTGAATCTGATGATGATGACCTGTACTTATCAGAGTGTAGAATATTACTTGTTGGCTTTGAAGCTTCTGACATGTGGAAACTAGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGATATTTGTCTTTCAATGACAAGTTGACACACATAGTAATTGGAAACCCTTCAGAAACGGAAAAGAAGGATATAAGGGGTCTTGCTGCTTTAGGTGTCATATATGTTGTTAAAACCTCCTGGCTTGAAGATTGTAACCGTGAAAGGAAAGAAGTACCTGTTCTTAGGAGACACATTGCCTCTGATCTACTTCTTCCGAAAGGTCTCCTACTATTGTTAAAAGGGGCATCAGCAGGCATGTCCATTGATCAAGGTAAAAGCTATGGCTTTCGTAAAAGCTTCCAAACCGATCAGATGGTGGGTGTTACGGGCTCTGGAGTTGCAATGTCAGTATCTTTGGTGAAAAGCAAAGAACAGAAACTTGATATGGGTACAAATGTTCACACATTCAGTGAAGCAATGAGAAGATCTACTGCAGCAAAATCAATATCCTGTAGTAAATTGATTGCTCAAAAGATGACGCAACGTGACTCCAGTGTAGAATATGTGAAGTCAACAACTGTTTTCAGAGGGAAAATATTTTGTTTCTCAAATTTATTTCCTGAAGAAAGGAGAGCTGAGGTTGTTCAGTGGATACATCAAGGGGGAGGACAAGTAATAAGAGGGCAAACAAAACAGAAGGTCCACTATACTATCGAGTGTCATGGTGTAACAACCAGGTTGACAGGAAATTCTCAAAGTAGATACGTTTCCAGTCATTGGATACGATCTTGTTTAGAGGCTGGATCCCTTCAGGATGTTGACAGTCACATTCTTTATTCTCCACTTCCCTGCCATATTCCCTTGCCTGGGTTTGAAAGCTTCCGGTTTTGTGTTTCCCAATATGAGGAAAAAGACAGAATTCTACTTAGGAACCTGTGTTTTGTTTTAGGAGCTAAATTTGTGGAGAAGTTGAATAAAAAAGTCACCCATTTGTTGTGTAAATTTACCAATGGGCCTAAGTATGAGGCTGCTTGTAAGTGGGGCATCCGATCAGTTACATCTGAATGGATATATGAATGTGTCAAACAGAATGCTGTTGTTCCCATCTATCAATTTTATCCAAAAGAAGTCACTGCTCAAGATCAAGAGGCAGGGATTTGTACAGTCAGTCAATTTCCTACCCAGGCTGTTCGAATGATTAGTGACATGACCTCCCAGTTTCCAAGTCAATCACAAAATTTGATAAACAAACCAAATGAAAACATAGGTAGCGGGCTTGAAAGTCATGGGACTGATTCTAAAATATCAAGTATTCCCAGCAAAAAGGCAAGGCTTGTGGAAGAGCCTGGGCCATATGATAAGGTGTCTTCTGCAGTAGATTCAGGTATTCATGCTTATGGCATGAATTTTTCTGAAGACAATGTGCTTAAAGATGCTGGTGAGGTTTCTTATGCTATTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACAAGTAAGGTAAAA 2658 0.4123 MLKTKAFNGANVFMSRNLVPPEVFDTLHDALKDNGAQVHLCCDPSRNGPNDYHVISCSKHEKFEDLKSRGCKLLGPRCVLSCAKECRPLPKQGFTCCLAMDGVKVLASGFNTIEKVKIEEIVTEMGGVVHTKASLDLNFVIVKNVLAAKYKWALNMLKKPIVTYEWLKQCSDEHRVVPQESYKVLPFTGLTICVTAIPADKRKEMEKLILQNGGKYSAELTKKCTHLISDISFPYEGDKYKVARRWGHIHIVTKKWFDQSIARRACLNEESYPVQNGSVSSQKVVRDFTVQHSPEKNIEKLQSAASTAATDANMPVFSYAEFVDKDLEATPSEYMSSFSNAPPFVKEANAEAPPVQPSIELKLDGAVANDSESDDDDLYLSECRILLVGFEASDMWKLVNMVRKGGGSRYLSFNDKLTHIVIGNPSETEKKDIRGLAALGVIYVVKTSWLEDCNRERKEVPVLRRHIASDLLLPKGLLLLLKGASAGMSIDQGKSYGFRKSFQTDQMVGVTGSGVAMSVSLVKSKEQKLDMGTNVHTFSEAMRRSTAAKSISCSKLIAQKMTQRDSSVEYVKSTTVFRGKIFCFSNLFPEERRAEVVQWIHQGGGQVIRGQTKQKVHYTIECHGVTTRLTGNSQSRYVSSHWIRSCLEAGSLQDVDSHILYSPLPCHIPLPGFESFRFCVSQYEEKDRILLRNLCFVLGAKFVEKLNKKVTHLLCKFTNGPKYEAACKWGIRSVTSEWIYECVKQNAVVPIYQFYPKEVTAQDQEAGICTVSQFPTQAVRMISDMTSQFPSQSQNLINKPNENIGSGLESHGTDSKISSIPSKKARLVEEPGPYDKVSSAVDSGIHAYGMNFSEDNVLKDAGEVSYAIPDVAAAIEDLLEQTSKVK 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1410 886 Gene3D BRCT domain 570 666 IPR036420 -
Dod08g1410 886 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Dod08g1410 886 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Dod08g1410 886 Gene3D BRCT domain 365 464 IPR036420 -
Dod08g1410 886 ProSiteProfiles BRCT domain profile. 182 274 IPR001357 -
Dod08g1410 886 SMART BRCT_7 4 86 IPR001357 -
Dod08g1410 886 SMART BRCT_7 670 746 IPR001357 -
Dod08g1410 886 SMART BRCT_7 377 457 IPR001357 -
Dod08g1410 886 SMART BRCT_7 574 650 IPR001357 -
Dod08g1410 886 SMART BRCT_7 97 174 IPR001357 -
Dod08g1410 886 SMART BRCT_7 184 264 IPR001357 -
Dod08g1410 886 SUPERFAMILY BRCT domain 186 275 IPR036420 -
Dod08g1410 886 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 885 - -
Dod08g1410 886 Gene3D BRCT domain 672 773 IPR036420 -
Dod08g1410 886 Gene3D BRCT domain 186 275 IPR036420 -
Dod08g1410 886 CDD BRCT 103 170 - -
Dod08g1410 886 Gene3D BRCT domain 37 94 IPR036420 -
Dod08g1410 886 Pfam twin BRCT domain 190 256 IPR001357 -
Dod08g1410 886 Pfam twin BRCT domain 677 738 IPR001357 -
Dod08g1410 886 Pfam BRCA1 C Terminus (BRCT) domain 101 170 IPR001357 -
Dod08g1410 886 Gene3D BRCT domain 98 185 IPR036420 -
Dod08g1410 886 CDD BRCT_TopBP1_rpt2_like 186 264 - -
Dod08g1410 886 CDD BRCT_TopBP1_rpt2_like 671 746 - -
Dod08g1410 886 Pfam BRCT domain, a BRCA1 C-terminus domain 574 657 IPR001357 -
Dod08g1410 886 ProSiteProfiles BRCT domain profile. 673 756 IPR001357 -
Dod08g1410 886 SUPERFAMILY BRCT domain 669 756 IPR036420 -
Dod08g1410 886 ProSiteProfiles BRCT domain profile. 572 660 IPR001357 -
Dod08g1410 886 SUPERFAMILY BRCT domain 373 461 IPR036420 -
Dod08g1410 886 ProSiteProfiles BRCT domain profile. 375 467 IPR001357 -
Dod08g1410 886 SUPERFAMILY BRCT domain 575 662 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1410 1 886 Core DNA Replication Machinery Family AT1G77320 50.985 0.0 849
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1410 K10728 - gmx:100804966 1284.63