Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1402 ATGCCAGCTTCCCCTTCCTTCCCATCAGAAAACCGAACCAAATGGAGGAGGAAGCGCAAGAGAGAATCCCAAGTCGGCAAGCGCCACTACAAGCACCACCGCGACGACGACGAAGACGAAGAGGATAACGAGCCCAACACGGCTGAGGAAGACCGCCTCGACGATTCCGACGACCAATCCGGCCGCCCTAACCCCCAATTGGCGCCGAATCCCGTCGAGATCGAGGCCGTATCCGGCGACGGCGTCCGGATTTCGAACTTCCCGGCGGCGATCAAGCGAGCGGTGACCTGCCCCCACTCGTCCGTAGCCGCGATTGTGGCGCTGGAGCGGACCAGCGAGTCTGGTGACCGGAACGGTCAGCTGCAGCAGAATGCGCCGGTTCTGGAGAATGTGTCCCATGGGCAGCTTCAGGCGCTGTCGAGGGTGCCCGCGGATAGCCCCGCTTTGGATCAGGACCGCGGCGACGGGGGCAGTTCGAGTTGTGTCGTTGCTCCCCCGCCGATTTTGGAAGGCCCCGGTAATGTTAAGCGGTTTTGGAATGGGGTTCTTGTGGTGCCAACGCATTCAGATTGGTTTTCACCAGCCTCAGTCCACCGACTTGAGAGGCAAGTGGTGCCACATTTTTTCTCTGGAAAATCACCGGATCGTACACCAGAAAAGTACATGGATTATAGAAACTACATTGTTGCAAGGTACATGGAGGACCCAGTGAAGAGAATTACAGTCTCTGATTGCCGGGGATTGTTGGTTGGGGCTGACAATGAGGATGTAACTCAAATCATCCAGTTCCTTGATCACTGGGGAATTATCAATTACTGTGCCCAGGGACCAAGTAACGAGCCTCAGCACAATGATACTTACCTGAAAGAGGAGACAAGTGGTGAGGTCCATGTGCCATCAGCTGCTTTACGATCCATAGATAGTTTGATCACATTTGACAAGCCAAAGTGTAAACTCCAAGCAAAAGAAATTTATTCATCGTTGACAACTGACAGTGCTGACATATCTGATTTGGAAGACAGAATAAGAGAGCATCTATCTGAAAATCATTGCAATTATTGTTCTCGTCCTCTTCCTGTTGTATACTACCAGTCACAAAAAGAGGTTGATATTTTACTCTGCATTGATTGCTTTCACGATGGGAGATTTGTCATTGGTCATTCAAGTATAGACTTTATAAGGGTGAATTCAACAAACAATTATGATGATCAAGATGGGGATAGTTGGACTGACCAAGAAACTTTGCTGCTGCTTGAAGCAGTAGAGGTTTACAGTGAGAATTGGAATGAAATTGCTGAGCATGTCGGCACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTCCGCTTACCCATGGAAGATGGAAAGTTGGAAAATATCAATGTTTCAAGCATGTCTTCGTCATCAAATGTGATGAATAGAGATGATAATGGAATATTGCATTGTTGCATCAATGGGGATTCTACAGGAACTGTACACAGCAGAGATTTTGATGGCAGGCTTCCTTTTGCAAATTCTGGAAATCCTGTTATGGCTCTGGTTGCCTTTTTATCCTCTGCTATTGGACCAAGAGTAGCTGCTGCTTGTGCACATGCCGCATTAGCTGCATTGTCAGAGAATAATTCTGGCAGCATGTCACAGTTAGAAGCACTGGAGCATGATAATAGGGCAAATCCAGAAAGCATACATAGTAGAGATGATAGCCTTCATGGAGAGATTGCATGTTCAAATCAGAAAAATGACTACAAGGCTCAAAATGAGAGCAGGACCACCCTATTATCTGCTGAGAAAGTCAAAGATGCTGCTAAAGCAGGCCTCTCTGCTGCAGCAATGAAGGCAAAATTGTTTGCAGATCATGAAGAACGAGAAATTCAGAGACTGTGTGCTAATATTGTGAATAATCAGTTGAAAAGATTGGAATTGAAGCTGAGGCAGTTTGCGGAAATTGAAACATTGTTGATGAAAGAATGTGAACAAGTTGAGAAGACGAGGCAAAGGTTTGTTGCTGAACGGTCCCGTGTTATGTCAGCTCATATCGGAACTGGTGGGGCTGCTCCTCCATTGAATGTAGCAGGGGTTGGTTCTTCCATGGTTAGCAGTAATAACACTAGTAGACAACAAATGATCCCGGCTTCTTCCTCACAGCCTAGCATCTCTGGGTATGGAAATAGCCAACCAGTTCATCCACACATGTCCTTTGTCCCACGGCCTTCAGTGTTTGGGTTGGGGCAGAGGTTGCCCCTTTCTATGATACAGCAATCACAATCAGCTTCTTCAAATCCTGGATTCAATGCCCCTGGTAATGTGCAGCCTAATACCAACCGCCCGCTGTTGAGACCTGTATCAGGGACTAACTCTGGTTTAGGTTAA 2370 0.473 MPASPSFPSENRTKWRRKRKRESQVGKRHYKHHRDDDEDEEDNEPNTAEEDRLDDSDDQSGRPNPQLAPNPVEIEAVSGDGVRISNFPAAIKRAVTCPHSSVAAIVALERTSESGDRNGQLQQNAPVLENVSHGQLQALSRVPADSPALDQDRGDGGSSSCVVAPPPILEGPGNVKRFWNGVLVVPTHSDWFSPASVHRLERQVVPHFFSGKSPDRTPEKYMDYRNYIVARYMEDPVKRITVSDCRGLLVGADNEDVTQIIQFLDHWGIINYCAQGPSNEPQHNDTYLKEETSGEVHVPSAALRSIDSLITFDKPKCKLQAKEIYSSLTTDSADISDLEDRIREHLSENHCNYCSRPLPVVYYQSQKEVDILLCIDCFHDGRFVIGHSSIDFIRVNSTNNYDDQDGDSWTDQETLLLLEAVEVYSENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVSSMSSSSNVMNRDDNGILHCCINGDSTGTVHSRDFDGRLPFANSGNPVMALVAFLSSAIGPRVAAACAHAALAALSENNSGSMSQLEALEHDNRANPESIHSRDDSLHGEIACSNQKNDYKAQNESRTTLLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNNQLKRLELKLRQFAEIETLLMKECEQVEKTRQRFVAERSRVMSAHIGTGGAAPPLNVAGVGSSMVSSNNTSRQQMIPASSSQPSISGYGNSQPVHPHMSFVPRPSVFGLGQRLPLSMIQQSQSASSNPGFNAPGNVQPNTNRPLLRPVSGTNSGLG* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1402 789 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 65 788 - -
Dod08g1402 789 ProSiteProfiles Zinc finger ZZ-type profile. 346 400 IPR000433 GO:0008270
Dod08g1402 789 Pfam SWIRM-associated region 1 604 676 IPR032451 -
Dod08g1402 789 ProSiteProfiles SWIRM domain profile. 183 281 IPR007526 GO:0005515
Dod08g1402 789 Pfam Myb-like DNA-binding domain 408 450 IPR001005 -
Dod08g1402 789 SUPERFAMILY Homeodomain-like 183 276 IPR009057 -
Dod08g1402 789 Gene3D - 189 276 IPR036388 -
Dod08g1402 789 MobiDBLite consensus disorder prediction 13 28 - -
Dod08g1402 789 CDD SANT 408 450 IPR001005 -
Dod08g1402 789 Coils Coil 629 649 - -
Dod08g1402 789 ProSiteProfiles SANT domain profile. 404 455 IPR017884 -
Dod08g1402 789 PANTHER SWI/SNF COMPLEX-RELATED 65 788 - -
Dod08g1402 789 MobiDBLite consensus disorder prediction 751 789 - -
Dod08g1402 789 MobiDBLite consensus disorder prediction 1 73 - -
Dod08g1402 789 MobiDBLite consensus disorder prediction 696 719 - -
Dod08g1402 789 SUPERFAMILY Homeodomain-like 406 459 IPR009057 -
Dod08g1402 789 Pfam SWIRM domain 186 272 IPR007526 GO:0005515
Dod08g1402 789 MobiDBLite consensus disorder prediction 39 54 - -
Dod08g1402 789 Gene3D - 405 455 - -
Dod08g1402 789 ProSiteProfiles Myb-like domain profile. 401 451 IPR001005 -
Dod08g1402 789 SMART sant 405 453 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1402 Dod-Chr8 23529101 23536099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1402 351 447 EF-hand Containing Proteins AT3G07740 33.962 3.93e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1402 K11649 - gmx:100780440 1076.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1402 08 23529101 23536099 Dod08g1402 08 23529101 23536099 ECH
Dod08g1402 08 23529101 23536099 Dod09g1426 09 35673552 35676426 PCT