Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1397 ATGTCAAAGTCTCCCTCTCCTGAGCAACGGCAGTCCATTTATTCTTCTTCTGAGCCAAGGGAGTTTAGTGAGGCAACAGGAATGGAGGATCCCGAATCTACAATGTCGACAGTTGCTAATTTTGTGGAGCAACTGCATGCCAACTTGTCATCACCACAGGAAAAAGAACTTATTACAGCAAGATTGCTAGGTATTGCCAGGAGAAGAAAGGATGCTAGAGTACTTATTGGTTCCCATGCCCAAGCCATGCCACTGTTCATAAACATCCTCAGAAATGGAACCCCTTTTGCAAAAGTTAATGTTGCTACCACTCTCAGTGTCCTGTGCAAAGATGAAGACTTACGGTTAAAAGTACTTCTTGGTGGTTGTGTCCCACCATTACTGTCACTTTTGAAGCATGAATCCACTGATGCAAGAAAGGCAGCAGCTGAAGCAATATATGAAGTTTCCTCTGGTGTTCTTTCAGATGATCAAGTTGGTATGAAAATTTTTGTTACAGAAGGTGTAGTTCCAACCTTGTGGAATCAATTAAACCCAAAGAACAAGCAAGACAAAGTTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTATGCAGTGACAAAGATGGCTACTGGAAAGCAACATTAGAAGCTGAAGGTGTTGATATCATTGTGGGTCTCTTGTCTTCAGACAATGCTGTTTCTCAGTCAAATGCAGCTTCTCTATTGGCACGTTTAATGTTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGATTGTGGAGCAGTCAAAGCTTTACTTCAGCTCGTTGGTCAGGAAAATGATATTTCTGTACGAGCTAGTGCTGCTGATGCCCTAGAGGCCCTTTCTTCAAAGTCAACCAAGGCTAAGAAAGCTATTGTTGGTGCTGATGGTGTTCCAATCCTTATTGGAGCTATAGTTGCTCCTTCAAAAGAATGTATGCAAGGTGATGGTGGCCAGGCTCTTCAGGAGCATGCAACTCGAGCTTTAGCAAATATCTGTGGTGGCATGTCTGCTTTAGTACTATATCTTGGAAAACTTTCCTGTTCTCCTCGCCTTGCTGCTCCTGTTGGGGATATAATAGGTGCTCTTGCTTACACCCTCATGGTCTTTGAGGAAAAAGTTGATGTTGATCAGGAACATTTTGATGCAACTCAGATAGAGGATATTCTAATAACTCTTTTAAAGCCTCGAGACAATAAGCTGATTCAAGAACGTGTCCTTGAGGCTATGGCTAGCCTATATGGAAATGTCTATCTCTCAAAGTGGTTCAATCAGGCAGATTCAAAAAAGGTTCTTATAGGACTTATAACTATGGCTGCCACTGATGTGCAAGAGTATCTGATACGGTCATTGACAAGCTTGTGCTGTGATAGGGTAGGAATATGGGAGGCGATAAAGAACAGAGAAGGTATCCAGTTACTTATATCATTGTTGGGATTATCTAGTGAGCAGCATCAAGAGTACTCAGTTCATTTGCTAGCAATCTTAACTGAACAAGTTGATGACAGCAAGTGGGCAATCACTGCTGCTGGGGGGATTCCACCATTGGTGCAGTTGTTGGAGACAGGATCACAGAAAGCAAGAGAGGAAGCAGCTAATGTTCTGTGGAGTTTGTGTTGTCACAGTGAAGATATTCGTGCTTGTGTTGAAAGTGCTGGGGCCATTCCGGCATTTTTGTGGCTTCTTAAGAGTGGTGGACCAAAAGGACAAGAAGCTTCTGCTATGGCACTCACAAAGCTTGTCAGAGTAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTCCTTGGGGATTCTCCAAGCTCAAAGGCCCATATAATCCAAGTTTTAGGTCATGTCCTTACTACGGCTTCACTCAAGGATCTCCTGGAAAAGGGCTCTGCGGCTAATAAAGGCTTGAGATCTCTTGTTCAAGTTCTCAATTCATCGAATCAGGAAACCCAAGAATATGCAGCTTCAGTGCTTGCCACTCAGTCAGCTCGAGCATTAAGTGCTCTATCTCGTCCAACCAAGGGCAAAGCTGGAAATAAGATGTCTTATATAGTGGTCGGGGATGTTGAGCCACTAATCAAGTTGGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCTGCGGAGGCTCTGGCTGAAGATGTTGTTTCTGCTTTAACCAGACTTCTGGCGGAAGGAACTTTTGAAGGAAAACAAAATGCATCCCGTGCTCTTCATCAATTATTGAAGCATTTCTCAGTAGGTGATGTTCTCAAGGGGAATGCACAATGCCGTTTCACTGTGCTTGCACTTGTTGATTCCTTAAGAGCTATGGATATGGGTGGGACTGAAGTTGCAGACGCTTTAGATGTAATTGCATTGCTAGCCAGGACTAAACAGAGTGTCAACTTCACTCACCCACCATGGTCGGCTCTGGCTGAAATACCATCAAGCATAGAACCCATTATTTGCTGCCTGGCTGAGGGGCCTCCCCTTGTGCAAGACAAGGCAATACAAATTCTGTCTAGGCTTTGCGGAGAGCAGTCAGTTGTTCTTGGTGACTTGTTATCTTCTAGTTCTAGATGCATTGGTTCATTAGCAAATAGAATAATGAATTCCTCTAGTTTAGAAGTGAAAGTGGGAGGGGCTGCCTTACTAATTTGTGCTGCAAAAGATAAGAAAGAGCTCTCGATGGATTTGCTTGATGCCTCTGGATATCTGAAACCATTAATATATTCTTTAGTTGATATGATGAAGCAGAGTTCTAGTTGTTCATTGTTAGAAATTGAAGTTTGCACTCCTAGAGGTTTTATGGAGAGAAATGCATTTCAAGAAGTTGATGAGTTTGATATTCCTGATCCAGCTACAGTCTTGGGTGGTACTGTTGCCTTGTGGTTAATTGCAATTATTGCTTCTGTCCATGTGAAGAACAAACTCACAATTGTGGAAGCTGGTGGGCTAGAAGCTCTCTCTGAAAAACTTGCAAGACATACATCAAATCCACAGGCAGAATATGAGGATACAGAAGGAATATGGATCAGTGCCTTAAATTTGGCTATTTTATTTCAAGATGCAAATGTCATTCTATCGCCTGCATCAATGCGCATTATACCTTCTCTCAGTCTTCTGCTAAGATCTGATGAAGTAATTGACAAATATTTTGCTGCCCAGGCTATGGCTAGTCTTGTCTGTAATGGTAATAAGGGAACAGATCTTGCCATTGCTAATTCTGGTGCTGTTGCTGGATTGATAACTATTATTGGTCATATAGAGTCAGAAATGCCAAACCTCATGGCTTTATCAGAAGAATTTTCTTTGGTGCAAACCCCTGATCAAGTTGTTTTGGATCATCTTTTTGAAATTAAGGATGTAAGAGTGGGATCTACTGCACGGGAATCTATACCCCTTTTAGTAGACCTTTTAAGACCAATACCAGAAAGGCCCAGTGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCAGGTGGGAGTGATACAAACAAATTAATCCTTGCTGAAGCTGGAGCTCTGGAAGCTTTGAACAAATACCTGTCCTTGAGCCCTCAAGACTCAACTGAGGCTGCTATTTCCGAGTTATTGAGAATATTATATTGCAACTCTGACCTAATTAAACATGAGGCATCAACAAGTTCACTGAACCAACTCACAGCAGTTTTGCGTCTTGGATCAAGAAATGCTAGATACAGTGCAGCAAGAGCACTCTATGAACTCTTTGATGCTGAGAACATTAGAGACTCAGAATTAGCTAAACAGGCCATTCAGCCATTGGTTGACATGCTTAATACTACATCAGGGAGTGAGCAGGAGGCTGCTCTAATGGCCTTGATCAAGTTAACTTTAGGAAATTCTTCAAAAGCATCTCTTTTTACAGATGTCGAAGGGAATCCACTTGAAAGTTTATACAAAATATTGTCTTCTGCTTCATCCTTGGAGTTGAAGAGCTATGCTGCACAACTTTGCTTTGCTCTGTTTGGTAATAGCAAGTTCAGAGCAGATCCCATTGCATCAGAATGCGTAGAACCGCTTATATCACTGATGCAGTCTGATTCTGGGATAGCAATAGAGTCTGGGGTTTGTGCTTTAGACAGATTGTTGGAAGATGAACAACAGGTAGAGTTTGTAGCAGCCTATAATGTTTTCGGATCTCCTTGCCAGCTTGGTTTCTGGTACAAACTATAA 4224 0.4216 MSKSPSPEQRQSIYSSSEPREFSEATGMEDPESTMSTVANFVEQLHANLSSPQEKELITARLLGIARRRKDARVLIGSHAQAMPLFINILRNGTPFAKVNVATTLSVLCKDEDLRLKVLLGGCVPPLLSLLKHESTDARKAAAEAIYEVSSGVLSDDQVGMKIFVTEGVVPTLWNQLNPKNKQDKVVEGFITGALRNLCSDKDGYWKATLEAEGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDCGAVKALLQLVGQENDISVRASAADALEALSSKSTKAKKAIVGADGVPILIGAIVAPSKECMQGDGGQALQEHATRALANICGGMSALVLYLGKLSCSPRLAAPVGDIIGALAYTLMVFEEKVDVDQEHFDATQIEDILITLLKPRDNKLIQERVLEAMASLYGNVYLSKWFNQADSKKVLIGLITMAATDVQEYLIRSLTSLCCDRVGIWEAIKNREGIQLLISLLGLSSEQHQEYSVHLLAILTEQVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSGGPKGQEASAMALTKLVRVADSATINQLLALLLGDSPSSKAHIIQVLGHVLTTASLKDLLEKGSAANKGLRSLVQVLNSSNQETQEYAASVLATQSARALSALSRPTKGKAGNKMSYIVVGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAEDVVSALTRLLAEGTFEGKQNASRALHQLLKHFSVGDVLKGNAQCRFTVLALVDSLRAMDMGGTEVADALDVIALLARTKQSVNFTHPPWSALAEIPSSIEPIICCLAEGPPLVQDKAIQILSRLCGEQSVVLGDLLSSSSRCIGSLANRIMNSSSLEVKVGGAALLICAAKDKKELSMDLLDASGYLKPLIYSLVDMMKQSSSCSLLEIEVCTPRGFMERNAFQEVDEFDIPDPATVLGGTVALWLIAIIASVHVKNKLTIVEAGGLEALSEKLARHTSNPQAEYEDTEGIWISALNLAILFQDANVILSPASMRIIPSLSLLLRSDEVIDKYFAAQAMASLVCNGNKGTDLAIANSGAVAGLITIIGHIESEMPNLMALSEEFSLVQTPDQVVLDHLFEIKDVRVGSTARESIPLLVDLLRPIPERPSAPPVAVRLLISIAGGSDTNKLILAEAGALEALNKYLSLSPQDSTEAAISELLRILYCNSDLIKHEASTSSLNQLTAVLRLGSRNARYSAARALYELFDAENIRDSELAKQAIQPLVDMLNTTSGSEQEAALMALIKLTLGNSSKASLFTDVEGNPLESLYKILSSASSLELKSYAAQLCFALFGNSKFRADPIASECVEPLISLMQSDSGIAIESGVCALDRLLEDEQQVEFVAAYNVFGSPCQLGFWYKL* 1408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1397 1407 Gene3D - 1121 1258 IPR011989 -
Dod08g1397 1407 SMART arm_5 1172 1212 IPR000225 GO:0005515
Dod08g1397 1407 SMART arm_5 156 200 IPR000225 GO:0005515
Dod08g1397 1407 SMART arm_5 623 663 IPR000225 GO:0005515
Dod08g1397 1407 SMART arm_5 544 584 IPR000225 GO:0005515
Dod08g1397 1407 SMART arm_5 287 336 IPR000225 GO:0005515
Dod08g1397 1407 SMART arm_5 201 242 IPR000225 GO:0005515
Dod08g1397 1407 SMART arm_5 111 151 IPR000225 GO:0005515
Dod08g1397 1407 SMART arm_5 502 542 IPR000225 GO:0005515
Dod08g1397 1407 SMART arm_5 1254 1295 IPR000225 GO:0005515
Dod08g1397 1407 SMART arm_5 981 1030 IPR000225 GO:0005515
Dod08g1397 1407 SMART arm_5 717 757 IPR000225 GO:0005515
Dod08g1397 1407 SMART arm_5 676 716 IPR000225 GO:0005515
Dod08g1397 1407 SMART arm_5 458 500 IPR000225 GO:0005515
Dod08g1397 1407 SMART arm_5 244 285 IPR000225 GO:0005515
Dod08g1397 1407 SUPERFAMILY ARM repeat 664 1091 IPR016024 -
Dod08g1397 1407 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Dod08g1397 1407 SUPERFAMILY ARM repeat 1139 1395 IPR016024 -
Dod08g1397 1407 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Dod08g1397 1407 Gene3D - 663 942 IPR011989 -
Dod08g1397 1407 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 11 659 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Dod08g1397 1407 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Dod08g1397 1407 PANTHER - 11 659 - -
Dod08g1397 1407 PANTHER - 659 1396 - -
Dod08g1397 1407 Gene3D - 1259 1395 IPR011989 -
Dod08g1397 1407 Gene3D - 29 365 IPR011989 -
Dod08g1397 1407 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 659 1396 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Dod08g1397 1407 SUPERFAMILY ARM repeat 386 763 IPR016024 -
Dod08g1397 1407 MobiDBLite consensus disorder prediction 1 32 - -
Dod08g1397 1407 MobiDBLite consensus disorder prediction 1 22 - -
Dod08g1397 1407 Gene3D - 967 1117 IPR011989 -
Dod08g1397 1407 Gene3D - 366 662 IPR011989 -
Dod08g1397 1407 SUPERFAMILY ARM repeat 71 309 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1397 Dod-Chr8 23346382 23352262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1397 450 711 U-box Gene Family AT1G23030 26.667 2.01e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1397 - - gmx:100796864 2293.08