Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1396 ATGGTCAAAGCTGGCATTATAAATAATTGTCTCAAGCTGCTCCAACTAGCACCTAGCTCATTATGCTCAACAATAGCTGAGCTGTTTCGCATTTTAACTAATAGTAATGCAATTGCTAGAAGTTCAGATGCTGCAGAAATCATAGAACCCCTTTTCCATGTTTTGCTACGTCGAGATTTCAACTTATGGGGACAACATAGTGCCTTACAAGCACTTGTAAATATATTGGAAAAACCACAAAGTCTTGCAACCTTAAAGCTTACTCCTAGTCAAGTTATTGAACCCTTGATTTCTTTTTTGGAATCCCCATCCCAAGCTATTCAGCAACTCGGCACAGAACTTTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACAAAGAATGCAGTTGTGCCACTGGTACAGCTTGCTGGAATTGGGATATTGAACTTACAGCAAACAGCAATAAAAGCATTGGAAAAAATTTCCACAAGCTGGCCAAAGGCAGTTGCTGATGCGGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGATGACCCTCAGCCACCACATGCACTCTGGGAATCGGCTGCTTTAGTTCTCTCAAATGTATTACGTTCCAATGCTGATTACTATTTTAAAGTTCCTGTGGTGGTTCTTGTAAAATTGTTGCACTCAACACTTGAAAGTACAGTTAGCATTGCCCTTAATGCATTAATAGTTTATGACAAAAGCGATGCTTCAAGTGCTGAACAGATGATGGAAGCTGGAGCTATAGATGCTCTGTTGGACCTTTTAAGATCTCACCATTGTGAAGAAGCATCTGGTAGATTACTGGAAGCTTTATTTAACAATGTCAGAGTACGTGAGATGAAGGTATCTAAGTATGCTATAGCGCCTTTATCACAGTATCTGTTAGATCCACAAACTAAATCACAGTCTGGCAAGCTTCTTGCTGCTTTAGCTCTGGGAGATCTTTCCCAGCATGAAGGACATGCTAGAGCTAGTGACTCAGTTTCCGCATGTCGTGCACTGATTAGTTTACTTGAAGATCAGACAACTGAAGAAATGAAGATGGTGGCTATATGTGCATTGCAAAACTTTGTCATGAACAGCAGGACCAATAGACGAGCTGTTGCAGAAGCTGGGGGCATATTGGTGATTCAGGAATTGCTGCTGTCTCCAAATACAGAAGTTGCCAGACAAGCAGCATTACTGATCAAATTTTTGTTTTCTACCCATACACTGCAAGAATATGTGTCAAATGAGCTGATCAGGTCATTGACAGCTGCACTGGAAAGAGAGTTGTGGTCAAGTGCCACAATCAATGAAGAGGTTTTGAAAACGCTGCAGGTGATATTCCTGAACTTCCCGAAGCTCCACATATCTGAAGCAGCAACCCTTTGCATTCCTCATTTGGTAGGGGCACTTAAATCTGGTAGCGAAGTGGCTCAGGACTCTGTACTTGATACCTTTTGCTTGCTAAAACAATCTTGGTCAACTATGTCAATAGATATTGCAAAGTCTCAAGCTATGATTGCTGCTGAAGCCATCCCCATCTTGCAAATGCTCATGAAAACCTGCCCACCGAGTTTCCATGAGAGGGCAGATACTCTTCTGCACTGCTTACCAGGTTGTTTGACTGTCACTATTAAGCGTGGAAACAACCTTAAGCAAACTATGGGAGGCACCAATGCATTCTGCAGGTTAACAATAGGCAATGGTCCCCCGAAACAAACCAAGGTGGTGAATCATAGTACTTCTCCAGAATGGAAAGAAGGGTTCACATGGGCATTTGATGTGCCTCCGAAGGGCCAAAAGCTCCATATCATATGCAAAAGCAAGAATACTTTTGGGAAGACAACTCTAGGGAGAGTCTTGATCCAAATTGATAAAGTTGTGACAGAAGGGGTTTATAGTGGATTATTCAGTCTTAATCATGACGGCAACAAAGATGGTTCATCCAGAACTCTTGAAATTGAGATTATATGGTCCAACAGGATTTCTAATGATGATATTTGA 2016 0.4132 MVKAGIINNCLKLLQLAPSSLCSTIAELFRILTNSNAIARSSDAAEIIEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLRSNADYYFKVPVVVLVKLLHSTLESTVSIALNALIVYDKSDASSAEQMMEAGAIDALLDLLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTKSQSGKLLAALALGDLSQHEGHARASDSVSACRALISLLEDQTTEEMKMVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVARQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSSATINEEVLKTLQVIFLNFPKLHISEAATLCIPHLVGALKSGSEVAQDSVLDTFCLLKQSWSTMSIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLKQTMGGTNAFCRLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKTTLGRVLIQIDKVVTEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRISNDDI* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1396 671 Gene3D C2 domain 543 670 IPR035892 -
Dod08g1396 671 Pfam C2 domain 544 643 IPR000008 -
Dod08g1396 671 ProSiteProfiles C2 domain profile. 524 641 IPR000008 -
Dod08g1396 671 CDD C2 545 635 - -
Dod08g1396 671 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 669 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Dod08g1396 671 SUPERFAMILY ARM repeat 187 541 IPR016024 -
Dod08g1396 671 Gene3D - 125 332 IPR011989 -
Dod08g1396 671 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 542 648 IPR035892 -
Dod08g1396 671 Gene3D - 333 541 IPR011989 -
Dod08g1396 671 PANTHER - 1 669 - -
Dod08g1396 671 SMART C2_3c 544 640 IPR000008 -
Dod08g1396 671 Gene3D - 1 124 IPR011989 -
Dod08g1396 671 SUPERFAMILY ARM repeat 3 163 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1396 Dod-Chr8 23339174 23346314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1396 218 390 U-box Gene Family AT5G67340 31.250 2.34e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1396 - - gmx:100796864 1230.7