Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1382 ATGCAGGGAATGGATTTTAAAACGGAGAAGGTGAGGTCCTTGGTGCGCAAATGGCAGACTTTGATTGAAGCTCATGTTGATGTGAAGAGAACCTGCTATGGTCAATCCAACCAGATTCGAGAGATTCGCAATGAGATGAGGGATATAATGACCAATCAGGCAACAGGTTGTGATTTTAAAGAGTTGGCCCGTAAATTCATCTCTGAGATGTTTGGAAAAGAGATTAAGAATGCAAGCAGAGCCTATGTTATTTTGTTATTGTCGGTTCATGGTGATAAGTATGAAGATGTTGGCACTAAGGCAGACAGGCTCAAGGATGAAACAATGGCTGAGGCAACCACTGAAGTTGTTGGAGCTTGA 360 0.425 MQGMDFKTEKVRSLVRKWQTLIEAHVDVKRTCYGQSNQIREIRNEMRDIMTNQATGCDFKELARKFISEMFGKEIKNASRAYVILLLSVHGDKYEDVGTKADRLKDETMAEATTEVVGA* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1382 119 PANTHER 40S RIBOSOMAL PROTEIN S3A 2 31 - -
Dod08g1382 119 PANTHER 40S RIBOSOMAL PROTEIN S3A 86 119 - -
Dod08g1382 119 PANTHER 40S RIBOSOMAL PROTEIN S3A 28 80 - -
Dod08g1382 119 SMART Ribosomal_S3Ae_2 1 89 IPR001593 GO:0003735|GO:0005840|GO:0006412
Dod08g1382 119 Pfam Ribosomal S3Ae family 2 30 IPR001593 GO:0003735|GO:0005840|GO:0006412
Dod08g1382 119 Pfam Ribosomal S3Ae family 35 80 IPR001593 GO:0003735|GO:0005840|GO:0006412
Dod08g1382 119 PANTHER 40S RIBOSOMAL PROTEIN S3A 2 31 - -
Dod08g1382 119 PANTHER 40S RIBOSOMAL PROTEIN S3A 86 119 - -
Dod08g1382 119 PANTHER 40S RIBOSOMAL PROTEIN S3A 28 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1382 Dod-Chr8 22684623 22685720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1382 3 119 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 45.342 6.37e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1382 K02984 - gmx:100808747 143.665