Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1342 ATGGTCAAGACAGAGAACAAGATCCACAGAGAACAATCAAAGCCAATGCGACCTTCACCTTCAGCATCACCAAATGACAAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGCTCATGGGTGTCAGAGATAAGAGCACCAAACCAGAAAACAAGAATATGGCTAGGCTCTTATTCAACTGCTGAGGCTGCAGCCAGAGCCTATGATGCTGCACTCCTATGCCTTAAGGGCTCCTCAGCCAACCTCAACTTCCCTTTAAGCTCTTCACAGTACATCCCACAAGACACTGTCATGTCCCCTAAATCAATCCAAAGAGTCGCTGCAGCTGCTGCCAACAACTTCATGGACAATGCTAGCACCTCATCACCTTCTCCTTCTCCTACTCCTTTTTCAGCCTCATCATCATCACTGGTCTCGTCCCCATCAATGTCATCATCATCTCCCTCAGATCAAGTTGATGATGATGTCTCACTGCTGTCACCGTTTGGGGCCTACACTAGCTGTGATCAAGGGCATGAATCAATGGCTATGATGGAGTCTTGGTACGATTTTGGAGGCCTACAATCCCCAAAATACGTGGATCAAATGCTAACTGGTGTGTTGTTTGATTTTGATTCGACTCAGCTGCTTGATGATCTATACGAAGAGAGTGACATTCGTTTGTGGAACTTCTGCTGA 681 0.467 MVKTENKIHREQSKPMRPSPSASPNDKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPLSSSQYIPQDTVMSPKSIQRVAAAAANNFMDNASTSSPSPSPTPFSASSSSLVSSPSMSSSSPSDQVDDDVSLLSPFGAYTSCDQGHESMAMMESWYDFGGLQSPKYVDQMLTGVLFDFDSTQLLDDLYEESDIRLWNFC* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1342 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 226 - -
Dod08g1342 226 MobiDBLite consensus disorder prediction 119 154 - -
Dod08g1342 226 MobiDBLite consensus disorder prediction 1 30 - -
Dod08g1342 226 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Dod08g1342 226 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Dod08g1342 226 Gene3D AP2/ERF domain 28 88 IPR036955 GO:0003700|GO:0006355
Dod08g1342 226 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
Dod08g1342 226 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Dod08g1342 226 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Dod08g1342 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 12 226 - -
Dod08g1342 226 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Dod08g1342 226 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1342 Dod-Chr8 20673876 20675153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1342 30 225 AP2-EREBP Transcription Factor Family AT1G21910 50.246 1.67e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod08g1342 AP2 4.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1342 - - gmx:100813313 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1342 08 20673876 20675153 Dod08g1342 08 20673876 20675153 ECH