Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1340 ATGGCCATGGACATGGACATGGACATGGACATGGAAATTATAACGGATGGCGTCCCTGACCTCCTCGACTTCTCCGGATACAGCACCGCCACACCTACTTCCGATGAGGACTGTAACTGGAACCACTGGTCTCCAGTCGTCAACTGGGATTCCTTCATCACCGACAACGACGGCTTTCACGGCCTCATCGACTCCCTCCCGGCCGCCGCCACTGCCACCGGCGGTGATATTCTGGGCCCAGATCACGGCGGCGTGGAGGAAGAATCAAGCGCTGATGGCTGCATCTCCGCTTTAACAGTAACAACGGAGGATGAAGGCGGCGGAGGCGGGGACGATCTCAAGGACCTGCGGCTGGTCCACCTCCTGATGGCGGCTGCGGAGGCGCTCACGGGCGCCACCAAGAGCCGTGACCTGGCTCGAGTGATATTGGTTCGGCTCAAGGAGTTGGTGTCCCCCACACACGGCACCACCATGGAGAGGCTTGCGGCGCATTTTACCGACGCCCTTCAGGCTTTGCTAGAGGGCGCCGGAGGTGCGCACAACACCACCACTTCAGCAAAGCACCAACAATGTGTCATCAGTGGGGCCCACCGCGAGGACCACCACCAAACCGATATGCTGGCGGCCTTCCAGTTTCTTCAGGACATGTCCCCTTACGTCAAGTTCGGGCACTTCACTGCCAACCAGGCAATCTTGGAGGCCGTTGCCCACGAGAGGAGGGTCCACATCGTCGATTATGACGTCATGGAGGGGGCCCAATGGGCCTCTCTCATGCAGGCCTTCTCCTCCTCTCGCAAGGACGGCTCGCCGGGCCCACATCTCAGAATCACTGTATTGTCCCGAGGAGCTAGCGGACGAAGATCTTTCGCCACTGTCCATGAAACGGGGCGGAGGTTGACTGCTTTTGCTGCCTCTTTAGGACAACCGTTCTCGTTTCATCAATGCAGGTTGGACCCGGACGAAACGTTTCGACCGTCTTCTCTGAAACTGGTTCGCGGCGAGTTGTTAGTGTTCAACTGCATGCTTCACCTACCACACCTCAGTTACCGTGCCTCTGATTCGGTTGCCTCGTTCTTGAGCGGAGCCAAGGAATTGAGCCCGAGGCTTGTGACCCTGGTGGAGGAAGAGGTGGGGCCCACTGAGGACGCAGGCTTTGTGGGCAGGTTCATGGACTCGTTGCAGCATTATTCGGCGGTGTATGATTCGCTGGAGGCTGGGTTTCCTATGCAGATTCGGGCCAGGGCTTTGGTGGAGCGGGTGTTCTTGGGCCCGAGAATAGCGGGCTCGTTGGGCCGGATATACCGGACGGGAGGCGAGGACGAGAGAAGGTGGTGGGGGGAGTGGTTGCGTGCGGCAGGGTTCACGGGAGTACCTATAAGCTTTGCTAACCATTGTCAAGCGAAGCTGTTGGTGGGTCTGTTTAACGACGGGTATAGGGTGGAGGAATTGGGCAACAATAAGTTGGTGTTGGGTTGGAAATCAAGGCGTTTGCTTTCTGCCTCTATTTGGGCTTCTATTTCAGAGTCTAATTATTAG 1536 0.5749 MAMDMDMDMDMEIITDGVPDLLDFSGYSTATPTSDEDCNWNHWSPVVNWDSFITDNDGFHGLIDSLPAAATATGGDILGPDHGGVEEESSADGCISALTVTTEDEGGGGGDDLKDLRLVHLLMAAAEALTGATKSRDLARVILVRLKELVSPTHGTTMERLAAHFTDALQALLEGAGGAHNTTTSAKHQQCVISGAHREDHHQTDMLAAFQFLQDMSPYVKFGHFTANQAILEAVAHERRVHIVDYDVMEGAQWASLMQAFSSSRKDGSPGPHLRITVLSRGASGRRSFATVHETGRRLTAFAASLGQPFSFHQCRLDPDETFRPSSLKLVRGELLVFNCMLHLPHLSYRASDSVASFLSGAKELSPRLVTLVEEEVGPTEDAGFVGRFMDSLQHYSAVYDSLEAGFPMQIRARALVERVFLGPRIAGSLGRIYRTGGEDERRWWGEWLRAAGFTGVPISFANHCQAKLLVGLFNDGYRVEELGNNKLVLGWKSRRLLSASIWASISESNY* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1340 511 Pfam GRAS domain family 118 503 IPR005202 -
Dod08g1340 511 ProSiteProfiles GRAS family profile. 109 504 IPR005202 -
Dod08g1340 511 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 504 IPR005202 -
Dod08g1340 511 PANTHER SCARECROW-LIKE PROTEIN 26 8 504 IPR030028 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1340 Dod-Chr8 20467300 20468974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1340 86 505 GRAS Transcription Factor Family AT5G41920 32.304 1.84e-50 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod08g1340 GRAS 4.7e-97 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1340 - - gmx:100787926 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1340 08 20467300 20468974 Dod08g1340 08 20467300 20468974 ECH