Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1337 ATGACCAGGAAGAAGGTGAAACTTGCCTATATTCAGGATGACTCTGCGAGGAAAGCAACATTCAAGAAAAGGAAGAAGGGCATCTTGAAAAAGGTGAGTGAACTCACCATTCTTTGTGGGATTCAAGCTTGTGCTATAATTTCCAACCCTTTTGACTCCCAGGCAGAGGTTTGGCCAAATCTAGAGGAAGTTAAGCAGGTGATTGAGAGGTATCAAAGCTCGGCGATAGATGAAAGCAAGAATATAAATCAAGAGAGCTTCATGTTGCAGAGGATTGCAAAAGCCAAGGACCAACTAAAGAAACAACGTAAGGAAAACCAAGAGAAAAAGATGCTCTTATCTATGTATGAGTATATGCAAACAAAAGAGCTGCCAGATCATTTGACTATCGCAGACGTAAAAGATATCGACAAGCTGATTGATCAGAATATGATCGACATTGAAAACAAGATGGTTGCACTTGCTTGA 468 0.4038 MTRKKVKLAYIQDDSARKATFKKRKKGILKKVSELTILCGIQACAIISNPFDSQAEVWPNLEEVKQVIERYQSSAIDESKNINQESFMLQRIAKAKDQLKKQRKENQEKKMLLSMYEYMQTKELPDHLTIADVKDIDKLIDQNMIDIENKMVALA* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1337 155 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Dod08g1337 155 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 153 - -
Dod08g1337 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod08g1337 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod08g1337 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Dod08g1337 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod08g1337 155 PANTHER MADS BOX PROTEIN 2 153 - -
Dod08g1337 155 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Dod08g1337 155 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Dod08g1337 155 Coils Coil 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1337 Dod-Chr8 20392435 20392902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1337 1 151 Type I MADS-box Gene Family AT5G48670 47.059 7.00e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod08g1337 SRF-TF 6.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1337 - - gmx:100792290 203.371