Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1325 ATGAGCAAACCCAAAATCCATACATGTCCCACCACTACCACCAAGTATGTCAACCAAAACCAAATGATCCAACAGCCCCAGAAGACCGAGAAACAACACTCATGGGCAGTGTTGAGGGGCCTATTGACCTGCAAAGATGTTCAAGTCCAACAGCCGCAGCCTCAGGTGAAACACCCAAGGCAGAAACATCAGCAGAAGGTATCGAAGCCTCAGGAGGAGCGTGTTCCAGAAGGAAACAGCAAGAAATGCAAGAAGATGAGATGTTCTGGCTCCCTTTGCAATAGCACCTGGGTCATGGCAAGGCCTGCAGAAAATGGAGCCCTTGATAAGAGAGAGGTATCACTGGTTCGTGCATGCAATAGCATTGATGCCTCTAACAGATCCATGAGAGCTGCTCCACGAAACGAGATCAATGGAGTGGTGTCTGCAGCATCTTATTCTTCTTCGTTGTCAGCATCTTCCCATCCTTCTGTCAGTGATTCTTGTAGTAGGGGAATGCCACTCAGGAGACTCTCTGGTTGTTATGAGTGCCGAATGGTCGTTGACCCTGTCCTTGGCTTCACCAGAGACCCTTGTAGCATTTGTTCTTGCCCTCACTGTGGTGAGACCTTCACCAAAGCTGGAAGCATGGAGCACCATCAGGCTGCCATACATGGGGTTTCTGAACTGGGTCCAGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAATCTTGCTGGCTTAAGAACCAATCCCCAAAGTGCAAAATAGACCGCATCCTCAAGGTCCACAACACACAGAAGACAATTAGCAAGTTCGAAGAGTACAGAGAATCCATTAAAGCCAAAGCCACGAGGCTCTCAAAAAAGCACCCTCGTTGCATAGCAGACGGAAACGAGCTTCTAAGGTTCCACTCCACCACCTTCATGTGCTCACTAGGCCAAAGCGGGTCCTCCAACCTTTGCAACGATACACAACAGTGCAATGTGTGCAGCATAATCAGGAACGGTTTCAAGGTCGTCGCTGCGGGAGAATCATCATCATCCAACGGTGGTGCAAAGGGTATCTTGACAATGGCAACAAGCGGGAAGGCACATGACAAAGCAGTGGTGTCATCACAGAATGAGGGTAGCGACAAGAGGGCAATGCTGGTTTGCAGGGTGATTGCAGGGAGGGTGAAGAAGAACAACAACGCAGAAGGTGGCATATCCATGGAGGAGTATGATTCGGTTGCAGGAGGTGGTGTCAATGGGGCTTATTCGAATTTGGACGAGTTGTATGTTTTCAACCATAGAGCAATATTGCCTTGCTTTGTTGTCATCTACAAAGGCTTTTGA 1320 0.4848 MSKPKIHTCPTTTTKYVNQNQMIQQPQKTEKQHSWAVLRGLLTCKDVQVQQPQPQVKHPRQKHQQKVSKPQEERVPEGNSKKCKKMRCSGSLCNSTWVMARPAENGALDKREVSLVRACNSIDASNRSMRAAPRNEINGVVSAASYSSSLSASSHPSVSDSCSRGMPLRRLSGCYECRMVVDPVLGFTRDPCSICSCPHCGETFTKAGSMEHHQAAIHGVSELGPEDTSKNIVEIIFQSCWLKNQSPKCKIDRILKVHNTQKTISKFEEYRESIKAKATRLSKKHPRCIADGNELLRFHSTTFMCSLGQSGSSNLCNDTQQCNVCSIIRNGFKVVAAGESSSSNGGAKGILTMATSGKAHDKAVVSSQNEGSDKRAMLVCRVIAGRVKKNNNAEGGISMEEYDSVAGGGVNGAYSNLDELYVFNHRAILPCFVVIYKGF* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1325 439 ProSitePatterns Zinc finger C2H2 type domain signature. 195 218 IPR013087 -
Dod08g1325 439 MobiDBLite consensus disorder prediction 50 82 - -
Dod08g1325 439 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 437 - -
Dod08g1325 439 Gene3D - 219 438 - -
Dod08g1325 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 218 IPR013087 -
Dod08g1325 439 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 437 - -
Dod08g1325 439 MobiDBLite consensus disorder prediction 65 82 - -
Dod08g1325 439 SUPERFAMILY ADP-ribosylation 220 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1325 Dod-Chr8 19964826 19966727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1325 164 437 C2H2 Transcription Factor Family AT1G75710 50.338 1.57e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod08g1325 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1325 - - gmx:100817333 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1325 08 19964826 19966727 Dod08g1325 08 19964826 19966727 ECH