Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1314 ATGACCGGAGACTTATGCCACCGGGAGAAAGAGATGACGGTTACGGCTGAGGAAGGCGGTTGCGTCACCGACGAGAGGCCGTTACCGGCCGAAATTCCGGCGACCCTGCCGGGAATCGAAATTGATTATTACTCTCAGGCGAGGAAAGCGCTCAGCCTGCGCTCGCCGTTCGATGTCGCCGATGAGAAGACGGCTTTGACTTCGTCCGCCCCGCCCTCTCTGCCCAACTCCTTGGCGGGATTCTTGAATCGCCGCTCCGACGGCCGGGGGCGGCGGCGGAAGAAGTCCCACCCCGGTGGCCCGGCCGAAAAGAAGAAAATGTGGAAGGGCAGAGACAAGCCGCGTGGCCCCGGCAACATTTGGGTCGAGACTGAGGAGTACTTCAGAGAATTGGCATTGCCTGATATTGATACCTTGTTCGAAGCCTCGAATTCGGTTTCTAGGTTGGTTGCTCGGAAGTGTTTCTCTATTCCGGTGGTGGCACCGGAGAATGCGGCGAGGCTCGGTGTAGTTAGTAGTGGGAATGAGAATGATAAGTTGAATGATGAGAAGTTTAGTAGCGTGGGCGTGAAGAGTGTGGACTTCAATGTAGTTATTACTGAGAATGAAAAGGGGAATGAAAATCATGAGAAGTTGAATAGCGTGGTTGTGGAAAATGGGGACAGTTTAGTGGGTATTGTTAGTGTTGATGAGAATGATCATGAGATGTCTGATTGTGATGTTAGCTTAGAGTGGCTTCTAGGTTGTAGGAATAAAAGTTCTTTGACTTCTGAGAGACCTTTGAAGAGAAGGAAAGTTTCGGTTAGTGATGTCCGGCTGGAGAAAGTTTTAATTACTATTCCTCATGGGAACTTATCTTATTGCCATTATTGTGGCAGGGGAGGTGGCACAAGAGAGCCGAATCGGTTAATTGTCTGTGGTTCTTGCAAAGTTGCGGTTCATCGGAAGTGCTATGGTGTGCAGGGTGATGTAGATGGGTCTTGGTTGTGCTCGTGGTGTGAGCAAAAGAATGAAGTTGGGGAAAGAGCGAACCCTTGCATGCTTTGTCCCAACAAGGGTGGTGCTTTGAAACCTGTTAATAATAAGAATGGGAAAGGTGGTGGGATTGTCAAGTTTGCTCACTTGTTTTGTTGCCTGTGGACACCTGAGGTCTATGTGGATGATCTGAAGAAGATGGAGCCTGTTGCCATTGTGGGAGGAATCAAGGACAATCGGAGGAGATCAATGTGTAGCGTTTGCAAGTTGAAGCACGGCACATGCTTTCGATGTTGCCATGGAACCTGCAGGAGTTCTTTTCATCCTTTGTGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCTAAGTATGGCTCTGATAATGTTGAGCTGCAGGCTTTTTGCTGTAAGCACTCAGATCTACAAGAGAAAAGCAGCATCTTGCCACAGGGAGACTCTGTTGCCGTGGTTGGATGTGATGTTTCTGATGCCAGTGGCCTTCCAGTGAGATCAGCGGTGAACAAGGAACAGAGTTTGAAAACTGATTGCAGGAATGGAAGTAACGTTGGGATAGCCTCTGAAGGTAGTCCAGACAAATTGAGTCATAATGAACCAGAAGATGGAGGATTGTCTGATTGTAGTTTACCTGTTCAGGAGATGTTGGGATGTGACGCTGAGCAGCAACTATGTAATACTGGGACAGCGGTCTGGACCAGTGAGAATGCTAATTCATATGACACCCTCAATTTTGCACCTGTGTTAAAGAAGTTGATAGAGAAAGGAAAAGTTGATGTAAAAGAAGTAGCTTTGGAGATTGGCATTTCTCCGGAGACATTGACTACCAACATCAATGAGGCTTGCTTATCTCCTGATGTGCGACTCAAAATAGTCAATTGGCTAAAAGCCCATGTATTTTCTAATGCATTTCAGAAAGGTTTGAAAGTTAAATTCAGACCACCCAATTCATTTAAGGATGAAAATTCAGCCACCAATGGTTTTGACACTTCACCGATATCACATCAAGGTTTGGTAGATCCTGTTGCTGTTAAGTCAGTACCACCACGGAGAAGAACCATCAGCAACATTAGGATTTTGCATGATAATAAAGTGTTACATCCATCTGAGGCAGTTTGTACGGAGAATGGGATGCCTGTAGGCAAATTCAACTTAGGTGAAGCTGAAAATCCAGGAACTTTCATTGAATCATCCATTCCTGAAGTAATTGAAAAGAATTTGCCAGAGTCTGGGGATGCTTTTCCCAAAGGTGAAGGCAATGCTGATGAGCCCCACCAAAGCGGCTTGTCTGGACGCATTTCGGATGGGAAGTTCACTATATGTTTGCAGAATGATTCTATGCTTTTGAATCAACGCCTTCCTGTTTATTCTATATCTGAAGCACCTGATTCTGGTTTCATAAAGACAGAAGCAGTCTCTAGTTACATTCACCCATACATCAGCAATAAATTGCTTCAGATTCTTAATGGAATGCTCTCAGAGAACGTCATATGTCCAAGGGAGGAGGTATATTCCTCTTTAAAGGAATCCTCGAGGGTTAGTGGCTGTTCAAGTGACCAATATCAGCAGTTAACTTGCATTGATGATCAACCAAATATCGAGCAGTTAGCTGGGGCTAGAAAAATGGAAGTTTTGGAGAATTCTCCAGAAGATGAAGTGGAGGGGGAACTTCTATATTTTCAGCATAGATTATTGCAGAATGCAGTTCGAAGAATGCAGCTCGCTGATAACTTAATCTTCAATGTTGCCAAGAGTTTACCACAAGAGATTGATACGGCGCATCAGCAAAAATGGGATGCTGTGCTTGTTAATCAATATCTATGTGATCTTAGGGAGGCAAAAAAGAAGGGCAGAAAAGAGAGAAGACACAAGGAAGCACAAGCAGTCCTAGCTGCTGCAACTGCTGCTGCTGCTGCATCTTCTAGGGTTTCTTCTTTCCGGAAAGACGCCTTAGATGAATCTATGCAACAGGAGCCAATGCCACGGGCGAAAGAGACACTTTCAAGATTAGCTATGGCAAGGACTTCATCAGAGAAATATTCAGATTTTGGCTTGCCATCCTCAGATCTATCTGATGATCATCATAGATTTTGCGATATATGTAGACGATCTGAGACTATGTTAAACCCTGTCCTAGTCTGCTCTTGTTGCAAGGTTGCAGTTCACTTGGTTTGCTACCGTAGTGTGAGAGAAACGACGGGTCCCTGGTACTGTGAATTATGTGAAGATTTATCATCTAGAAACTCTGGAACACCATCTATCAATTTCTGGGAGAAGCATTATGTTGCAGAATGTGGTCTCTGTGGTGGGACTACTGGTTCTTTCAGGAAGTCTTCTGATGGTCAATGGGTTCATGCCTTCTGTGCTGAGTGGGTTTCTGAGTTGACATTCAAAAGAGGACAAGTACATGCTGTTGAAGGGATGGTGACCGTGCTAAAGGGAGTAGATATTTGTTGCATCTGTGGCCACAAGGTTGGTGTATGCTTAAAGTGTAGCTATGGCAATTGTCAGACCACATTCCACCCATCATGTGCAAGAAGTGCTGGTTTGTACATGAATGCGAGGATTGCTACCAAGCCACATCATAAAGCATACTGTGCAAAGCATAGTTCAGAGCAGAGGGCAAAGGCTGAAACTCAAAAATATGGAATTGAAGAGTTAAAAAGCATGAGGCAAATTAGGGTTGAGCTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTGAAACGTGAAAAGTTAAAGCGGGAATTGGTCCTGTGCTCACAAGACATACTTGCCTTTAAAAGAGATCATGTTGCTAGGTCTGTGTTAGTTCATAGCTCTTTCTTCCTTCCTGATGGTGGTAGTTCAGAATCAGCTACAACATCCCTTAATGGGAACACAGAGGGAAACAGGTCATGCAGTGAAACAGTCCAAAGATCAGATGATGTAACTGTGGACAGCTCAGTCTCTACTAGATGTCGTGTCAGAGTTGCTATATCCATGGACAATGACCCAAAAATGGATGATGACTGCTCAACCTCTCATAGCCCCTGTAACCGCAAGATTCCAGAACGGATGCAATTTTCTGGCAAACGGATTCCTCATAGAGCTTGTGCTTCATCACATAATACTTTGGATGGCTCTGGATGGAGATCAAAATCAAGAAAGGTGGGCTGCAATTATTTTATCATTTGGATATCTCCTATTTCTTTCTAA 4191 0.4476 MTGDLCHREKEMTVTAEEGGCVTDERPLPAEIPATLPGIEIDYYSQARKALSLRSPFDVADEKTALTSSAPPSLPNSLAGFLNRRSDGRGRRRKKSHPGGPAEKKKMWKGRDKPRGPGNIWVETEEYFRELALPDIDTLFEASNSVSRLVARKCFSIPVVAPENAARLGVVSSGNENDKLNDEKFSSVGVKSVDFNVVITENEKGNENHEKLNSVVVENGDSLVGIVSVDENDHEMSDCDVSLEWLLGCRNKSSLTSERPLKRRKVSVSDVRLEKVLITIPHGNLSYCHYCGRGGGTREPNRLIVCGSCKVAVHRKCYGVQGDVDGSWLCSWCEQKNEVGERANPCMLCPNKGGALKPVNNKNGKGGGIVKFAHLFCCLWTPEVYVDDLKKMEPVAIVGGIKDNRRRSMCSVCKLKHGTCFRCCHGTCRSSFHPLCAREARHRMEVWAKYGSDNVELQAFCCKHSDLQEKSSILPQGDSVAVVGCDVSDASGLPVRSAVNKEQSLKTDCRNGSNVGIASEGSPDKLSHNEPEDGGLSDCSLPVQEMLGCDAEQQLCNTGTAVWTSENANSYDTLNFAPVLKKLIEKGKVDVKEVALEIGISPETLTTNINEACLSPDVRLKIVNWLKAHVFSNAFQKGLKVKFRPPNSFKDENSATNGFDTSPISHQGLVDPVAVKSVPPRRRTISNIRILHDNKVLHPSEAVCTENGMPVGKFNLGEAENPGTFIESSIPEVIEKNLPESGDAFPKGEGNADEPHQSGLSGRISDGKFTICLQNDSMLLNQRLPVYSISEAPDSGFIKTEAVSSYIHPYISNKLLQILNGMLSENVICPREEVYSSLKESSRVSGCSSDQYQQLTCIDDQPNIEQLAGARKMEVLENSPEDEVEGELLYFQHRLLQNAVRRMQLADNLIFNVAKSLPQEIDTAHQQKWDAVLVNQYLCDLREAKKKGRKERRHKEAQAVLAAATAAAAASSRVSSFRKDALDESMQQEPMPRAKETLSRLAMARTSSEKYSDFGLPSSDLSDDHHRFCDICRRSETMLNPVLVCSCCKVAVHLVCYRSVRETTGPWYCELCEDLSSRNSGTPSINFWEKHYVAECGLCGGTTGSFRKSSDGQWVHAFCAEWVSELTFKRGQVHAVEGMVTVLKGVDICCICGHKVGVCLKCSYGNCQTTFHPSCARSAGLYMNARIATKPHHKAYCAKHSSEQRAKAETQKYGIEELKSMRQIRVELERLRLLCERIVKREKLKRELVLCSQDILAFKRDHVARSVLVHSSFFLPDGGSSESATTSLNGNTEGNRSCSETVQRSDDVTVDSSVSTRCRVRVAISMDNDPKMDDDCSTSHSPCNRKIPERMQFSGKRIPHRACASSHNTLDGSGWRSKSRKVGCNYFIIWISPISF* 1397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1314 1396 MobiDBLite consensus disorder prediction 64 117 - -
Dod08g1314 1396 SUPERFAMILY FYVE/PHD zinc finger 282 350 IPR011011 -
Dod08g1314 1396 SUPERFAMILY FYVE/PHD zinc finger 1016 1073 IPR011011 -
Dod08g1314 1396 Pfam PHD-zinc-finger like domain 345 464 - -
Dod08g1314 1396 Pfam PHD-zinc-finger like domain 1095 1200 - -
Dod08g1314 1396 CDD ePHD 1096 1200 - -
Dod08g1314 1396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1091 1203 IPR013083 -
Dod08g1314 1396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 467 IPR013083 -
Dod08g1314 1396 PANTHER PHD FINGER PROTEINS 799 1372 - -
Dod08g1314 1396 MobiDBLite consensus disorder prediction 738 761 - -
Dod08g1314 1396 SMART PHD_3 1148 1201 IPR001965 -
Dod08g1314 1396 SMART PHD_3 1028 1073 IPR001965 -
Dod08g1314 1396 SMART PHD_3 287 334 IPR001965 -
Dod08g1314 1396 SMART PHD_3 409 465 IPR001965 -
Dod08g1314 1396 Pfam PHD-finger 301 334 - -
Dod08g1314 1396 Pfam PHD-finger 1040 1073 - -
Dod08g1314 1396 ProSiteProfiles Zinc finger PHD-type profile. 285 336 IPR019787 -
Dod08g1314 1396 ProSitePatterns Zinc finger PHD-type signature. 288 333 IPR019786 -
Dod08g1314 1396 ProSiteProfiles Extended PHD (ePHD) domain profile. 1093 1201 IPR034732 -
Dod08g1314 1396 MobiDBLite consensus disorder prediction 1278 1302 - -
Dod08g1314 1396 ProSiteProfiles Extended PHD (ePHD) domain profile. 343 465 IPR034732 -
Dod08g1314 1396 ProSiteProfiles Zinc finger PHD-type profile. 1026 1075 IPR019787 -
Dod08g1314 1396 MobiDBLite consensus disorder prediction 510 537 - -
Dod08g1314 1396 PANTHER PHD FINGER PROTEINS 91 474 - -
Dod08g1314 1396 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 91 474 - -
Dod08g1314 1396 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 799 1372 - -
Dod08g1314 1396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1006 1081 IPR013083 -
Dod08g1314 1396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 342 IPR013083 -
Dod08g1314 1396 ProSitePatterns Zinc finger PHD-type signature. 1029 1072 IPR019786 -
Dod08g1314 1396 MobiDBLite consensus disorder prediction 66 80 - -
Dod08g1314 1396 MobiDBLite consensus disorder prediction 101 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1314 Dod-Chr8 19549436 19560108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1314 301 470 C2H2 Transcription Factor Family AT3G14740 30.460 4.25e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod08g1314 zf-HC5HC2H_2 4.9e-22 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1314 - - gmx:100777481 1548.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1314 08 19549436 19560108 Dod08g1314 08 19549436 19560108 ECH