Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1311 ATGTCTCCATCGCAGCCCCGCCGCCTGCGGCCGCCGCAGGCCGGCCAGCTGGACCCCAAAATCTGGCGCGCCTGCGCCGGCGCCGCCGTCCAGATCCCCGCCGTGCATTCTAGGGTTTACTACTTCCCACAAGGCCACCTCGAGCAAGCCTTCCCTCCCTCCCTTCACCACCACAACCACCACCTCCTCTCCCCTCTCCTCCGCCCCGTCCCCTTCGTCGTCTGCCGCGTCTCCTCCGTCCAATTCCTTGCCGATCCCCTTTCCGATGAGGTCTTCGCCAAGATTCTCCTCAATCCCATCGCCGCAGACCGTTCCGACGGCGAAGGCCCCGCCGAGGAGCCTGACGCCGGCGAGAAGGTCCCCTCTTTCGCGAAGATTCTGACTCCGTCCGACGCCAACAATGGCGGCGGGTTCTCCGTCCCGAGGTTCTGCGCCGATTCCATCTTCCCGCCGCTCGACTTCAAAGCCGACCCGCCGGTGCAGGTGCTCTCTGTGACCGACGTCCACGGCGCCGCATGGGAGTTCCGCCACATCTACCGCGGGACGCCCCGCCGCCACCTCCTCACCACCGGATGGAGCAAGTTCGTCAACCACAAGAAGCTCATCGCCGGCGATTCGGTTGTCTTCATGAAGAACTCCCAGGGCTCCATTTTTGTGGGCATTCGCCGGGCCCTGCGATTCCCTGCAGCTGCCGTGGCGGAGTATCTGCAGCTGGAGGAGGAGGAGGAGGGGCGCGGCGGCCTTGGCGGCAGCGGTGGTTCTCCTGTGTTTTCGAGGGACGGGAGGGGGAAAGTGTCGGCGAAGGCGGTGGCCGAGGCCGCAGAATTGGCGGCGAGGAGCGTGCCGTTCGAGGTGGTGTATTATCCGAGGGCCGGGTGGTCGGACTTCGTGGTGGCGGCTGAGGCTGTGGAGGGAGCGATGAAGGCAGCTTGGTGCCCCGGAATGAGAGTGAAGATGGCTGTGGAGACAGAGGATTCTTCAAGAATGACTTGGTTTCAGGGGACAGTGTCTTTGGCTTCTGCTCCTGATAATGGGCCTTGGAGGGGATCTCCTTGGCGCATGCTTCAGGTTACATGGGATGAACCTGAAGTCTTGCAGAATGCGAAGCGAGTCAGTCCTTGGCAGGTTGAACTTATTTCTCCCACAGCTTCACTTCATACTGCGTTTCCCCCAACAAAAAGGTTTAGAGCTGCTCAGGGTTCTGGGGTGTTAAGTGATGGAGAGGGAGACCCCTTCTTTCCTATGACAGCATTCACTAATTCAACAATGGAACACCTGAATCAATCATTGTTGAGTTATGATAATTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCGTCAAATTTTTCCAAGTTTTTAAACAATAACTGTCATCTGCGTATCGGTAGAGGTTTCTTTGGGAACACTACAGGGCCTCAGATGAATATGGTGTCAACAGAGTTAAACATTGGCAGTTGTCAATCTGGTGACTTCTCACCAGATAGCCCAAGTAGTTTGCATTCATTTGGCCTAGAGTTTGTTGGGACCAACAACTGCAACATCTCAAAAGTTGGTTCTGGTTCAATTCAGCTGTTTGGTAAGATAATAAAACCTGTTGAAATTGAGTTGCATGATACTGGTTGCATGGGAGATGATGGCTGTAAGGACTGCAATGAAACTGATAGTATTGACAAGCCAATCGGTCAATCTTTGGCTTATACAAAATTGCTCAATAGGCTTGATGTGGAAAGCCAGCGACCCTCACCGGTTGAGGCATGTTATCTGTGA 1779 0.5582 MSPSQPRRLRPPQAGQLDPKIWRACAGAAVQIPAVHSRVYYFPQGHLEQAFPPSLHHHNHHLLSPLLRPVPFVVCRVSSVQFLADPLSDEVFAKILLNPIAADRSDGEGPAEEPDAGEKVPSFAKILTPSDANNGGGFSVPRFCADSIFPPLDFKADPPVQVLSVTDVHGAAWEFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFMKNSQGSIFVGIRRALRFPAAAVAEYLQLEEEEEGRGGLGGSGGSPVFSRDGRGKVSAKAVAEAAELAARSVPFEVVYYPRAGWSDFVVAAEAVEGAMKAAWCPGMRVKMAVETEDSSRMTWFQGTVSLASAPDNGPWRGSPWRMLQVTWDEPEVLQNAKRVSPWQVELISPTASLHTAFPPTKRFRAAQGSGVLSDGEGDPFFPMTAFTNSTMEHLNQSLLSYDNFPAGMQGARHDLFSASNFSKFLNNNCHLRIGRGFFGNTTGPQMNMVSTELNIGSCQSGDFSPDSPSSLHSFGLEFVGTNNCNISKVGSGSIQLFGKIIKPVEIELHDTGCMGDDGCKDCNETDSIDKPIGQSLAYTKLLNRLDVESQRPSPVEACYL* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1311 592 Pfam Auxin response factor 273 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod08g1311 592 PANTHER AUXIN RESPONSE FACTOR 12 591 - -
Dod08g1311 592 Gene3D - 120 225 IPR015300 -
Dod08g1311 592 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Dod08g1311 592 CDD B3_DNA 121 223 IPR003340 GO:0003677
Dod08g1311 592 Gene3D - 311 384 - -
Dod08g1311 592 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 591 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod08g1311 592 SMART B3_2 123 225 IPR003340 GO:0003677
Dod08g1311 592 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677
Dod08g1311 592 SUPERFAMILY DNA-binding pseudobarrel domain 121 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1311 Dod-Chr8 19462199 19468590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1311 16 559 B3 DNA Binding Superfamily AT1G77850 49.737 2.54e-178 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod08g1311 B3 1.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1311 - - aip:107624033 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1311 08 19462199 19468590 Dod08g1311 08 19462199 19468590 ECH
Dod08g1311 08 19462199 19468590 Dod09g1347 09 34717001 34720899 PCT