Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1304 ATGCAGGAGAATAATGTATGTGAGCTCTTCATCAATTCCAATTCAACTAGTCATCCAAATAAGATGGGCATATATGAGCCATTCCATCAGGTTAGCATGTGGGGGGACAGCTTTAAAGTTGATGGCAGCCTGAATTCAATTGCTTCCCCAATGGAAATGGTGAACACTAGCATGGAGAACAAGTCCGAATGTATTTCTCATGAATCAAGAGAACCTTCTGGAGATGATCAAGAGACTAGTGATAAAGCTGGTAGTAAGGTTCTAAGACGTCTAGCACAAAACCGCGAGGCTGCTCGGAAAAGCCGGCTGCGGAAGAAGGCTTATGTTCAACAATTAGAATCAAGCCGCTTGAAGCTCATGCAATTGGAGCTGGAAATTGAGAAAGCAACCAAACAGGGTCTGTACATTGGCCACAGTGCTTTAGATGGCAGTTATATGGGATCATCTGGAGCAATAAACTCAGGGATAGCTGTGTTTGAAATTGAATATGGACAGTGGGTTGAAGGGCAGCACAGGCACAATGAAGAACTCAGAAATGCATTGCACACTAATGCATCTGATATACAGCTTCATCCACTTGTTGAGAGTAGCTTGAACCATTACTCAAATCTTTTCAGGATGAAAGCAGATGTTGCAAAGTTTGACATCTTTTACTTAATCTCTGGTGTGTGGAAAGCATCGGTAGAACGCCTTTTTCTTTGGATCGGAGGATCTCGCCCATCACAGCTTCTAAATATCATTGTGCCACAACTTGAGCCCTTGACTGATCGACAAATGGCTAGTATTAACAACCTTCGCCAATCATCTCAGCAAGCAGAGGATGCTCTTTCACTAGGATTGGATAAACTTCAGCAGAGCCTCGTCCACAGCATAGCAGCTGATGCATTTGCTGTAGGAAACTACGGATTTCAGATGGCTGTTGCCTTGGACAAAATTGAAGCACTAGAAGGTTTTGTAAGCCAGGCAGATCACCTTAGACAACAAACTCTGCTGCACATGTCGCGCATCCTGACAACTAGCCAGGCTGCTCAAGGCTTGCTGATTATGGGAGAATACTTCCACCGTCTTCGCACTCTTAGTTCTTTATGGACCGCTCGTCCATGTGATCCTTCCTAG 1116 0.4435 MQENNVCELFINSNSTSHPNKMGIYEPFHQVSMWGDSFKVDGSLNSIASPMEMVNTSMENKSECISHESREPSGDDQETSDKAGSKVLRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLELEIEKATKQGLYIGHSALDGSYMGSSGAINSGIAVFEIEYGQWVEGQHRHNEELRNALHTNASDIQLHPLVESSLNHYSNLFRMKADVAKFDIFYLISGVWKASVERLFLWIGGSRPSQLLNIIVPQLEPLTDRQMASINNLRQSSQQAEDALSLGLDKLQQSLVHSIAADAFAVGNYGFQMAVALDKIEALEGFVSQADHLRQQTLLHMSRILTTSQAAQGLLIMGEYFHRLRTLSSLWTARPCDPS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1304 371 Pfam Seed dormancy control 175 248 IPR025422 GO:0006351|GO:0043565
Dod08g1304 371 MobiDBLite consensus disorder prediction 63 86 - -
Dod08g1304 371 Coils Coil 105 132 - -
Dod08g1304 371 ProSiteProfiles DOG1 domain profile. 156 366 IPR025422 GO:0006351|GO:0043565
Dod08g1304 371 SUPERFAMILY Leucine zipper domain 88 118 IPR046347 GO:0003700|GO:0006355
Dod08g1304 371 PANTHER TRANSCRIPTION FACTOR TGA9 22 368 - -
Dod08g1304 371 PANTHER FACTOR TGA7, PUTATIVE-RELATED 22 368 - -
Dod08g1304 371 CDD bZIP_HBP1b-like 86 137 - -
Dod08g1304 371 Gene3D - 85 133 - -
Dod08g1304 371 MobiDBLite consensus disorder prediction 59 86 - -
Dod08g1304 371 Pfam bZIP transcription factor 86 115 IPR004827 GO:0003700|GO:0006355
Dod08g1304 371 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 89 104 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1304 Dod-Chr8 19237436 19242063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1304 22 371 Calmodulin-binding Proteins AT1G77920 56.044 1.13e-136 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Dod08g1304 DOG1 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1304 K14431 - gmx:100775882 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1304 08 19237436 19242063 Dod08g1304 08 19237436 19242063 ECH
Dod08g1304 08 19237436 19242063 Dod09g1339 09 34653922 34659320 PCT