Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1290 ATGGGTCGTGTTAAACTTGAGATAAAAAGAATAGAGAATGCCACGAATCGACAAGTGACATTCTCAAAGCGTAGGAATGGCCTCATCAAGAAAGCTTATGAGTTATCTATCTTGTGTGACATTGATATTGCTCTTATAATGCTTTCTCCATCAGGACGTCTCAGCCATTTTTCTGGCAGAAAGAGGATCGAGGATGTTTTTTCTCGTTATATTAATCTTCACGACCAAGAAAAAGATACTCATTATGGTAGTACAAACTTACAAATCTCTAAATGTTTGATCATTTTGCAGTATTTGCTTAGTACCCTTCAACAATTGAGGAGTGAAAATGATATAGCCCTTCAGCTGGCCAATTCGAGAGATGTTAACTCTGAAGTTGAGGAACTACAACAAGAAGTTAATAGGTTACAACAACAACTTCAAATAGCCGAACAGCAAATAAGGATACATGAACTCGACCCATTAAAGCTGATATCTATGGGAGAGCTTGAAGCAAGTGAAAAGCATCTCGTAGATATGTTGACACGAGTCATACAGAGAAAGGAATATTTGTTGAGCAACCATCTATCTACATATAATCCATCTGGTATTCAGGAAATGCCAACCTCTTTCGACAATGTAGGGTGGTTGCCAAATGGTAGTCAAAACCATACCCAAATTTTTGATGCATCTGCTCCATTGGATCCTCTCAGGGATTTGTCCTCCACTGTGTATGGTTCATTTTCACAAGGGACTAGTTCTAGTGTAGATCCACAGGGCTTGGCAGAGTGCCACATGACAAATCTAAGTGACGGGAATGTTACAACATGGCAACAAGGATACACATTATATCCTCATATTCAATATGAAATGCTGGGACTTAACATACCAGATATGATGTCTCATGGGCAAGTGAACATGCCAATCACCGCCTCAAATCTGGAACCACTTAAGAAAGAATCTGACAAATATGATTGTAAATCCCATCATCAGCTTAATGCTCAATGA 987 0.3891 MGRVKLEIKRIENATNRQVTFSKRRNGLIKKAYELSILCDIDIALIMLSPSGRLSHFSGRKRIEDVFSRYINLHDQEKDTHYGSTNLQISKCLIILQYLLSTLQQLRSENDIALQLANSRDVNSEVEELQQEVNRLQQQLQIAEQQIRIHELDPLKLISMGELEASEKHLVDMLTRVIQRKEYLLSNHLSTYNPSGIQEMPTSFDNVGWLPNGSQNHTQIFDASAPLDPLRDLSSTVYGSFSQGTSSSVDPQGLAECHMTNLSDGNVTTWQQGYTLYPHIQYEMLGLNIPDMMSHGQVNMPITASNLEPLKKESDKYDCKSHHQLNAQ* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1290 328 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Dod08g1290 328 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Dod08g1290 328 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod08g1290 328 Coils Coil 112 153 - -
Dod08g1290 328 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod08g1290 328 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod08g1290 328 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod08g1290 328 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod08g1290 328 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod08g1290 328 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 275 - -
Dod08g1290 328 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 275 - -
Dod08g1290 328 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Dod08g1290 328 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1290 Dod-Chr8 18747628 18753169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1290 1 304 Type I MADS-box Gene Family AT1G22130 53.750 2.74e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod08g1290 SRF-TF 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1290 - - pvu:PHAVU_008G170400g 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1290 08 18747628 18753169 Dod08g1290 08 18747628 18753169 ECH