Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1282 ATGGCAGCTGCAATGGATCTCTACACACAGCTTCTGTCAGATCCCTTCAGGGGTGGTGAGCTAATGGAAGTACTTGAACCTTTTTTCAAAAGTTCTTCCACAACAACAACCACAACCCCCTCTCAAACCTTATCGTCCCCTTCTTCAAATTCACATCTACCTTCAACTTCTACCTCTATTTATTCCTCTTCTCCTTCTACTTCTCACTCTCCTCCTCCTACCTACTATTCCTCTCCTCCTCTCCCTACTCAGCCCAATTTCTACACAGATGGTTGCTCCACAACAATGACCCCTCTATTTCCCTCAGGGTTATCAAACAGCCAAAACTTAATAGGCTTTGAGCAACCAACTTCTGTTCTCGGCTTGAACCCCCTAACCCAATTTCAGGTTGACCAGATCCAGGCCCAATCCCATCAGAACAACATGAACACCAACACACTCAGCTTTCTGTGCCCCAAGCCTGTGCCCATGAAGCAGGTTGGTGCATCCACAAAGCCCACCAAGCTCTACAGAGGGGTGAGGCAGAGGCATTGGGGAAAATGGGTGGCCGAAATCAGGCTCCCAAGGAACCGCACAAGGCTTTGGCTTGGAACCTTTGACACTGCCGAGGAAGCTGCCTTGGCTTATGACAAGGCAGCTTACAAGCTCAGAGGTGACTTTGCAAGGCTCAACTTCCCAGACCTGAAGCACCATGGTTCCTGTGTTGGCGGTGCCTTTGGGGAGTACAAGCCCCTTCATTCCACCGTTGATGCAAAGCTTGATGCTTTCTGTGCTGAGATGCACAAACAAGGGAAGCAGGACAAGCCTGTGAGGTCCTCCAAGAAGTCAGAGTTGGGTCCAAAGGAAGAGGAGAACAATAGCACTTGCAAGGTGGAAGCTGCTGCTCCTTCCTCTTTGTCACCTGTGATGACTGAGAGTGAGGTTTCTGCAGGTTCTTCTCCTCTGTCTGATCTTACATTCGATGATGTCGATGAGTCACAGTGGGATGCTGCTTCAGAACATTTTAATCTGCAGAAGTTCCCCTCTTATGAGATTGATTGGGATTCTCTGTGA 1053 0.49 MAAAMDLYTQLLSDPFRGGELMEVLEPFFKSSSTTTTTTPSQTLSSPSSNSHLPSTSTSIYSSSPSTSHSPPPTYYSSPPLPTQPNFYTDGCSTTMTPLFPSGLSNSQNLIGFEQPTSVLGLNPLTQFQVDQIQAQSHQNNMNTNTLSFLCPKPVPMKQVGASTKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPDLKHHGSCVGGAFGEYKPLHSTVDAKLDAFCAEMHKQGKQDKPVRSSKKSELGPKEEENNSTCKVEAAAPSSLSPVMTESEVSAGSSPLSDLTFDDVDESQWDAASEHFNLQKFPSYEIDWDSL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1282 350 MobiDBLite consensus disorder prediction 31 71 - -
Dod08g1282 350 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 349 - -
Dod08g1282 350 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 349 - -
Dod08g1282 350 MobiDBLite consensus disorder prediction 31 88 - -
Dod08g1282 350 SUPERFAMILY DNA-binding domain 169 227 IPR016177 GO:0003677
Dod08g1282 350 Pfam AP2 domain 170 218 IPR001471 GO:0003700|GO:0006355
Dod08g1282 350 CDD AP2 168 228 IPR001471 GO:0003700|GO:0006355
Dod08g1282 350 SMART rav1_2 169 232 IPR001471 GO:0003700|GO:0006355
Dod08g1282 350 MobiDBLite consensus disorder prediction 264 288 - -
Dod08g1282 350 PRINTS Ethylene responsive element binding protein signature 192 208 IPR001471 GO:0003700|GO:0006355
Dod08g1282 350 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Dod08g1282 350 MobiDBLite consensus disorder prediction 290 317 - -
Dod08g1282 350 ProSiteProfiles AP2/ERF domain profile. 169 226 IPR001471 GO:0003700|GO:0006355
Dod08g1282 350 MobiDBLite consensus disorder prediction 264 317 - -
Dod08g1282 350 Gene3D AP2/ERF domain 169 227 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1282 Dod-Chr8 18466784 18468563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1282 1 350 AP2-EREBP Transcription Factor Family AT1G78080 50.811 3.67e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Dod08g1282 AP2 4.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1282 K09286 - gmx:100800478 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1282 08 18466784 18468563 Dod08g1282 08 18466784 18468563 ECH
Dod08g1282 08 18466784 18468563 Dod09g1314 09 34314048 34316138 PCT