Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1265 ATGGGAAGGTCCCCATGCTGCGATGAAAATGGCCTTAAGAAAGGACCCTGGACTCCTGAAGAAGATCAAAAGCTAGTCAATTACATTCAGAAACATGGCCATGGAAGTTGGAGGGCTCTCCCTAAGTTAGCAGGTCTTAACAGATGTGGAAAAAGCTGCAGGCTAAGGTGGACAAACTATTTAAGGCCAGACATTAAGAGGGGCAAATTTTCTCAAGAAGAGGAGCAATCAATTCTGCATCTACATTCCATTCTTGGAAACAAATGGTCAGCAATTGCAACCCATCTTCCAGGAAGGACAGATAATGAGATCAAGAATTTCTGGAACACTCACTTAAAGAAAAGGTTGATTCAGATGGGTTTTGATCCAATGACACACCAGCCAAGAACTGACCTTCTTTCAAGCTTGCCATATCTGCTAGCTTTGGCTAACATGACAGACCTTATGGATCACCAATCTTTTGATGAACAGGCTGTGAGGCTACAAGCAGAGGCACTTCAGTTGGCAAAGCTTCAACACCTTCAGTATTTGCTCCAATCCTCAAATTCCTTAAGTACCATTATTAGTACCAACTCCTATGACCAAAATGCCATAACAAACATGGAAGCTTTCAGTTTGTTAAATTCAATCACTAATAATGTCAAAGACAATAATAACCCAGTTATGGACTGTCCACAACAGGATCATAACCCAGCTTCATTTTCTCATGGGACAATTTCTAGCTCCCAACCACTCCACCACTCAAGCATGTTATCTGACCTTTTAGACCCACAAGTCTCTTTCAGTTCCCAATCATGTTTGAATACTGAGCAGGGTCAAGGTACTAACTTTACAATGATGGGTCAAGGGGATCACACTGGTGATGCCTCTCCCTGGACTACTCTAACATCTCCTGCAGCTTCATCTATTCCACTAAATATGACAGGGACCTCAACTAGCAACCCAGGAGATGCCAGCAGCAGCACTTCCAGCTATGGAGGAGCATCATCTTATAATTGGCCTGAACTATTTTATGAGGATCCCATCATGCATGAGCTATCGTAA 1044 0.4272 MGRSPCCDENGLKKGPWTPEEDQKLVNYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQSILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKRLIQMGFDPMTHQPRTDLLSSLPYLLALANMTDLMDHQSFDEQAVRLQAEALQLAKLQHLQYLLQSSNSLSTIISTNSYDQNAITNMEAFSLLNSITNNVKDNNNPVMDCPQQDHNPASFSHGTISSSQPLHHSSMLSDLLDPQVSFSSQSCLNTEQGQGTNFTMMGQGDHTGDASPWTTLTSPAASSIPLNMTGTSTSNPGDASSSTSSYGGASSYNWPELFYEDPIMHELS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1265 347 CDD SANT 69 112 IPR001005 -
Dod08g1265 347 Gene3D - 11 67 - -
Dod08g1265 347 CDD SANT 16 61 IPR001005 -
Dod08g1265 347 SMART sant 13 63 IPR001005 -
Dod08g1265 347 SMART sant 66 114 IPR001005 -
Dod08g1265 347 MobiDBLite consensus disorder prediction 265 327 - -
Dod08g1265 347 Gene3D - 69 116 - -
Dod08g1265 347 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 254 - -
Dod08g1265 347 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod08g1265 347 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod08g1265 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod08g1265 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
Dod08g1265 347 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod08g1265 347 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod08g1265 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod08g1265 347 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1265 Dod-Chr8 17825915 17827791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1265 1 347 MYB Transcription Factor Family AT1G34670 55.135 1.09e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod08g1265 Myb_DNA-binding 3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1265 K09422 - gmx:100811162 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1265 08 17825915 17827791 Dod08g1265 08 17825915 17827791 ECH