Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1255 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACGTTCACCAAGGTGTTTGTTGGAGGACTAGCTTGGGAGACACCAACTGAAGAAATGCGCAGGTATTTTGAGCAGTTCGGAGACATTCTTGAAGCCGTCATCATCACTGATAAGAACACAGGAAAATCTAAAGGCTATGGATTCGTAACATTCCGTGATCCAGAATCAGCTCGAAGGGCTTGTGCTGAGCCAAACCCAGTTATAGATGGAAGAAGAGCAAATTGCAACATTGCTTCTCTTGGACGGCCAAGACCATCACCACCCAGAGGAAGAGGTACATTTCAAAGTGGAGGGGTGAGTAGCACAGGAGCACAGGGTGCGGCGTCGTATAGTGGTGTTCTGGCGGCAGGACCACCACCGTTGCCGCCGGCGCCACCACCACTGGTATACCCACCATATGGCTACCCTACCTACACTCCTGATTATGGGTACCACCAAGCCACATTGTACAACCCACAACTTCAGCAACAACAATATTATCAGCAACTCTATGGGCCATCATCTTCCACCATGGGCTCCCCATATTACTATGGATATTCTGTGCAAGCACCAAGGGGCACATTTTCTACACCGCAAGCACATCGGTTACCAACTGGACCATCTTATATATACTATCATACACCCATGGAAGGCTCCTTTTCTGCATATCGACCGCCTCAACAGTCAGCAACAAGGCAACCCTCTCCTTCCCCTAGTGATGCACAGACTCAACAGCGTACTTCCTCCGAGACAGCAGCTGGAATAGTTATACCTCCGGAAAGTTCAAATACCCAAGGGAAGAACTAA 825 0.4909 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAEPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQSGGVSSTGAQGAASYSGVLAAGPPPLPPAPPPLVYPPYGYPTYTPDYGYHQATLYNPQLQQQQYYQQLYGPSSSTMGSPYYYGYSVQAPRGTFSTPQAHRLPTGPSYIYYHTPMEGSFSAYRPPQQSATRQPSPSPSDAQTQQRTSSETAAGIVIPPESSNTQGKN* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1255 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 96 IPR000504 GO:0003723
Dod08g1255 274 MobiDBLite consensus disorder prediction 227 274 - -
Dod08g1255 274 MobiDBLite consensus disorder prediction 92 118 - -
Dod08g1255 274 PANTHER GEO13361P1-RELATED 1 264 - -
Dod08g1255 274 MobiDBLite consensus disorder prediction 225 274 - -
Dod08g1255 274 PANTHER - 1 264 - -
Dod08g1255 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 76 IPR000504 GO:0003723
Dod08g1255 274 SUPERFAMILY RNA-binding domain, RBD 9 117 IPR035979 GO:0003676
Dod08g1255 274 Gene3D - 3 111 IPR012677 -
Dod08g1255 274 CDD RRM_RBM24_RBM38_like 16 91 - -
Dod08g1255 274 SMART rrm1_1 17 89 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1255 Dod-Chr8 17568811 17575240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1255 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 2.96e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1255 K25006 - gmx:100787086 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1255 08 17568811 17575240 Dod08g1255 08 17568811 17575240 ECH
Dod08g1255 08 17568811 17575240 Dod09g1287 09 33994999 34000270 PCT