Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1229 ATGGCTAAGAAACACAGAAAGCTTTTCCCAACAGAAACCAGCACAAACCAAACCCAAGACTGTTCTGGCTTCTGTGACCCTGCATGCCCTTACAACTGCTACTCTTACCCTGACTACTATTTTTCCCCACCACCACCTATTTCATCCGGTGACCACTCCAGCAGTGTTAATCACATCTCCTCCTACTTGATAATCCTTGTTTCCTTATTCACTGTCATTTTTGCTGTTGTTGGATTCTATGTGATCAAAGTAAAGTGCTATGCTGATTGGTGTGGCTGGAGAATCAACGGTTCCATTCCCTCTCAATCAAACAACTCTGATGATGAGCTTCTCAATGAGAATCAAGTTGATCACCCCGTCTGGCTCATCACAACAATTGGTTTACAACAATCAATCATAAATTCCATCACCGTTTGCAAGTATAGGAAGGATGAAGGGTTGATCGAAGGGACCGAGTGTTCCGTGTGCTTGAACGAGTTTCGGGAAGGAGAGACCCTGAGACTCTTGCCGAAGTGCAACCACGCCTTTCACATCCCTTGTATTGACACATGGTTGAGGTCTCACACCAATTGCCCTCTTTGCAGAGCTGGTATTGTCTCCAACAATGTCACTTCTGAAGCAGCTGCGTCGAATTTGGATTCAGTGGAGCAAGGGAACACAAACCTGCGAGGAAATCAAGAGACACGGATCGAGAATTCGCGGAATGATGGGGGATTAGGCAACAATATGGTTACCAGTGTGGCCATGGAAAACAGTGCTGGAACAGGAGAAGCAAGTGAGGCGCTAGAATTCACTGATGAATCATGTTTCAAGGAGCGAGTGAATGTACTCAATGATCAAACAGGGGATCAATGGGTTCAAAATGATATGATACAAATAGATATTAGGCCCGTTTCTCCAGGTCAAGGCCTTGCAAATTCTTCTTCTAGAGAACCTGAAACTTATGTCATTGATCATACAGAGGATGACACAGAATTGCAGATCGTTAGCATTGGGAAGCAAGATGGTGATGACTCAAAAACAAGTAAAACAATGCGTCGTTCCTCAATTGAAGAGTGCTTGCACTTAAGTCCCGTTTCTATGAAAAGGTCATTCTCCTGTAGTGGAAGGATTCTGTCTGCAAGAGGTTACGTAAGTCTACACTCTACATAA 1152 0.4418 MAKKHRKLFPTETSTNQTQDCSGFCDPACPYNCYSYPDYYFSPPPPISSGDHSSSVNHISSYLIILVSLFTVIFAVVGFYVIKVKCYADWCGWRINGSIPSQSNNSDDELLNENQVDHPVWLITTIGLQQSIINSITVCKYRKDEGLIEGTECSVCLNEFREGETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVSNNVTSEAAASNLDSVEQGNTNLRGNQETRIENSRNDGGLGNNMVTSVAMENSAGTGEASEALEFTDESCFKERVNVLNDQTGDQWVQNDMIQIDIRPVSPGQGLANSSSREPETYVIDHTEDDTELQIVSIGKQDGDDSKTSKTMRRSSIEECLHLSPVSMKRSFSCSGRILSARGYVSLHST* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1229 383 SMART ring_2 153 194 IPR001841 -
Dod08g1229 383 Pfam Ring finger domain 152 195 IPR001841 -
Dod08g1229 383 CDD RING-H2_PA-TM-RING 152 195 - -
Dod08g1229 383 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 375 - -
Dod08g1229 383 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 375 IPR044675 -
Dod08g1229 383 SUPERFAMILY RING/U-box 143 200 - -
Dod08g1229 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Dod08g1229 383 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1229 Dod-Chr8 16691320 16693077 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1229 3 279 C3H Transcription Factor Family AT1G72220 42.994 7.21e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1229 - - aprc:113847030 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1229 08 16691320 16693077 Dod08g1229 08 16691320 16693077 ECH