Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1228 ATGGCGTTAGAAGCTGTGGTTTTCCCACAAGATCCACTTTCATATGGTTGGAGCAAGGATAATTATTTGTACTCCTTAGTTGGAGGAGGAAGTGGTGGTGGAGCTTGGAGCGGCAACAGCTACGGTTTCCAAGCATCAGAAGAGAGGAATGTTAATGATTCCTTTGTTGGAGTCGTGAACAACAACATAATCGAACAGAGTCTCCTTGCGAATTGGGACTCTTCATCTTCTTCTCCTCCTTCGGTGTTGCAAAATGTCAAGGAACAATGGGATTCGCACTCTTCCTCCCATGAGCCTTGCACCGCCCCAGTTGATCAATCACTACACGGAGGAGCTAATTTCACTGTTCCTTCTTCCTCCGTGGAAGACACAGTAGCCACCGCCACCACCACGGGTCGCCGCAAACGACGTCGCACGAAGAGCGTCAAGAACAAGGAGGAAATCGAGAACCAAAGGATGACCCACATTGCTGTTGAGCGAAATCGAAGGAAACAGATGAATGAGTATCTTGATGTCCTCAGATCCCTGATGCCTCCTTCTTATGTACAAAGGGGTGATCAAGCCTCTATTATTGGAGGCGCCATCAACTTTGTGAAGGAGCTAGAACAGCTTCTACAGTGCATGAAAGGCCAAAAGAAAACAAAGCACCAACAACAACAGCAGCAGAATAATGACTTCACTGCCACACCCTTTGCTGAGTTCTTCATGTTCCCTCAGTACTCGACGCGTGCAACTCACTGCAACACAGTCTACCCGATAACCAGCGAAGTGACGAAGCAATTACCGAGCCAGAACAAGTCATGGGCTGTAGCAGACATAGAAGTGTCCTTGGTGGACAGCCATGCCAATATGAAGATACTCTCAAAAAAGCAACCAGGGTTGCTTCTGAAGATGGTTGTTGGGTTACAAAGCCTGGGCTTCAGCATTCTCCACCTTAATCTTGCCACTGCGGACGATATGGTCCTTATCTCAGTGAGCGTAAAGGTTGAGGAAGGGTGTCAGCTGAATACGGTGGATGAAATCGCAGCCGCTGTGAATCAACTATTACGCACGGTCCATGAGGAAGCTCCTTTCAGCGCTAGTTGA 1086 0.4816 MALEAVVFPQDPLSYGWSKDNYLYSLVGGGSGGGAWSGNSYGFQASEERNVNDSFVGVVNNNIIEQSLLANWDSSSSSPPSVLQNVKEQWDSHSSSHEPCTAPVDQSLHGGANFTVPSSSVEDTVATATTTGRRKRRRTKSVKNKEEIENQRMTHIAVERNRRKQMNEYLDVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGQKKTKHQQQQQQNNDFTATPFAEFFMFPQYSTRATHCNTVYPITSEVTKQLPSQNKSWAVADIEVSLVDSHANMKILSKKQPGLLLKMVVGLQSLGFSILHLNLATADDMVLISVSVKVEEGCQLNTVDEIAAAVNQLLRTVHEEAPFSAS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1228 361 Gene3D - 140 229 IPR036638 GO:0046983
Dod08g1228 361 SMART finulus 156 207 IPR011598 GO:0046983
Dod08g1228 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 201 IPR011598 GO:0046983
Dod08g1228 361 Coils Coil 198 218 - -
Dod08g1228 361 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 356 - -
Dod08g1228 361 MobiDBLite consensus disorder prediction 74 102 - -
Dod08g1228 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 222 IPR036638 GO:0046983
Dod08g1228 361 Pfam Helix-loop-helix DNA-binding domain 151 202 IPR011598 GO:0046983
Dod08g1228 361 PANTHER MAX DIMERIZATION, MAD 1 356 - -
Dod08g1228 361 MobiDBLite consensus disorder prediction 74 146 - -
Dod08g1228 361 MobiDBLite consensus disorder prediction 111 128 - -
Dod08g1228 361 CDD bHLH_AtFAMA_like 153 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1228 Dod-Chr8 16661158 16664489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1228 1 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 44.776 1.67e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod08g1228 HLH 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1228 - - gmx:100803240 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1228 08 16661158 16664489 Dod08g1228 08 16661158 16664489 ECH
Dod08g1228 08 16661158 16664489 Dod09g1260 09 33732977 33734360 PCT