Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1227 ATGATCCAAAACGACAAAACTCTAGGACTATGCTTGATCAGTTTCCATGACAACGGCCACGCATGGTGGAACCACCTTTTGCTCCTCCTCCTTCTCATGCAGACACCCACGCCAGCAACATCTCAGCTTCAAGAACCACCAGTGGAACCAATTAACAATAAATCCACGCTCGTCATCATGAGCATCGTGGCCGTTATGTTCCTAATCTCGGGCTTCCTCTCCCTCTACTCCCACCAATGTGCAGGCCGTCAAACCCGGGTTCAGGCCAGGCTAGACCCCAACATGGCCACCAGCGACCCAGATCTGGGTCGCCGGTCGCACAGTGAGTCGCTTGGCCTGAACCAAGAGGCCATCGACACCTTCCCCACTTTCCTCTATTCAAGCGTGAAGGGCCTCAAGATTGGCACGTGCGCTCTGGCATGCGCGGTGTGCTTGAGCGAGTTCCAAGACGAGGAGACGCTTCGCCTGATCCCAAAGTGCAGCCACGTTTTCCACCTGACTTGCATCGATGTCTGGCTAGCATCTCACTCCACATGCCCGGTTTGCCGCGCCAACCTCGTTCCTGGACAAGACGACGTCGTGTCACTGTCTCCTATGTTGTCCATCCAGATTCCGAATGATCAAGAGGAGGAACAAGAGAACAACGTTGATGGGAGCAGTGAAGGAAGAGACCACAAGAGGGACAGCGAAAACGACGTCGAATCATCAAAAGATGATTTGCTTCGTAGGAGTCGTACGGTGAACCATGTTATTGCCCCAACACGGTCGAGGTCGACGGGGTTCTTGTGTGCGTTGTTGTTTCCACGGTCTAACTCAACGGATCACCCAGTGACGGTTCACGCTTGTGATGATGAGGAAAGGTTTACTCTGAGGTTACCCGATGAGGTTCGTATCCATGTGCTAAAGAACTCTACGCTAAAACGTACCAAAAGTTGCGTGGGGTTTGCGAGAATGAGTTGTGGGACTAAGGGGTACAGGACCAGAAGCGTGGGTGGTGGAGGTGGGAGGAGCTATTTCAAGTACGGGAGGTTTGACGGTACGACGCCGTTTTTCGCCTGGAATTGGAGTAGGTCGGCAAGACAATCATGTTCAGTGTTCGTGGGTAGCGTTGGATAA 1116 0.5287 MIQNDKTLGLCLISFHDNGHAWWNHLLLLLLLMQTPTPATSQLQEPPVEPINNKSTLVIMSIVAVMFLISGFLSLYSHQCAGRQTRVQARLDPNMATSDPDLGRRSHSESLGLNQEAIDTFPTFLYSSVKGLKIGTCALACAVCLSEFQDEETLRLIPKCSHVFHLTCIDVWLASHSTCPVCRANLVPGQDDVVSLSPMLSIQIPNDQEEEQENNVDGSSEGRDHKRDSENDVESSKDDLLRRSRTVNHVIAPTRSRSTGFLCALLFPRSNSTDHPVTVHACDDEERFTLRLPDEVRIHVLKNSTLKRTKSCVGFARMSCGTKGYRTRSVGGGGGRSYFKYGRFDGTTPFFAWNWSRSARQSCSVFVGSVG* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1227 371 MobiDBLite consensus disorder prediction 216 239 - -
Dod08g1227 371 Pfam Ring finger domain 140 183 IPR001841 -
Dod08g1227 371 CDD RING-H2_EL5_like 141 183 - -
Dod08g1227 371 SUPERFAMILY RING/U-box 135 188 - -
Dod08g1227 371 MobiDBLite consensus disorder prediction 204 239 - -
Dod08g1227 371 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 329 - -
Dod08g1227 371 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Dod08g1227 371 SMART ring_2 141 182 IPR001841 -
Dod08g1227 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 188 IPR013083 -
Dod08g1227 371 PANTHER RING FINGER DOMAIN-CONTAINING 12 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1227 Dod-Chr8 16606938 16608730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1227 59 343 Rapid Response to Elicitors AT2G35000 38.225 2.85e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1227 K10664 - gmx:100814384 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1227 08 16606938 16608730 Dod08g1227 08 16606938 16608730 ECH