Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1226 ATGGTGGTGGAGTTTGACGAGGATGAGGGCAACGTCGGAGGCACGAGCAACGTCATAGGCACAGTGGCAAAGAGCCTCCTCCCACATCATTCTGGAGAGAGCCGCCGACAACTGCAAGGCTACGCGGTAGGCTCGACCTCGCCATCCTCGCCGCCGCAGGCAGAATCGGGAGCAGCAGCCGCCGGCAGCAGCGGGCTCAACCGGGAAGTCGTCGGCTCATTCCCGACCTTCGCATACTTCGCCGTGAAGTGCCACAAGATCGGGCGGGACGCGCTGGAATGCGCCGTGTGCCTCATCGAGTTCCGCGACTACGAAACACTGCGTTTGATCCCCGATTGCTACCACGTGTTCCACCCGGACTACATCGACGTCTGGCTCTCCACTCACTCCACGTGCCCCGTTTGCCGCGCAAACCTCGTGCCAATACCCGGTGACGCGTCATCATCATCCCTCGCGATCAACGTCTTCGATCAACCCGACCCGGAACCAAATAACAACGGCTCGAATCTCGATTCTCGGGTCAACGACGATGACCGAAATAGAGTAATATTATTAACAGAGTCCGAGTCCCACCTAGAGAGGAGTACTAGTTTGGATGATGAGAGCCATTCGGTTCGGTCGTTTCGGCATTTTAACTCGATGGGTCACTCACCGGTTCGAGCGGAGGAGGACTCGGAGCATTTCACGCTGAGGCTGCCGGAGGGGGGTTGCGGAACCAACTTGTGA 726 0.584 MVVEFDEDEGNVGGTSNVIGTVAKSLLPHHSGESRRQLQGYAVGSTSPSSPPQAESGAAAAGSSGLNREVVGSFPTFAYFAVKCHKIGRDALECAVCLIEFRDYETLRLIPDCYHVFHPDYIDVWLSTHSTCPVCRANLVPIPGDASSSSLAINVFDQPDPEPNNNGSNLDSRVNDDDRNRVILLTESESHLERSTSLDDESHSVRSFRHFNSMGHSPVRAEEDSEHFTLRLPEGGCGTNL* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1226 241 MobiDBLite consensus disorder prediction 154 171 - -
Dod08g1226 241 PANTHER RING FINGER DOMAIN-CONTAINING 53 236 - -
Dod08g1226 241 PANTHER RING-H2 FINGER PROTEIN ATL11 53 236 - -
Dod08g1226 241 SUPERFAMILY RING/U-box 88 147 - -
Dod08g1226 241 MobiDBLite consensus disorder prediction 40 61 - -
Dod08g1226 241 Pfam Ring finger domain 93 136 IPR001841 -
Dod08g1226 241 MobiDBLite consensus disorder prediction 215 241 - -
Dod08g1226 241 MobiDBLite consensus disorder prediction 216 230 - -
Dod08g1226 241 MobiDBLite consensus disorder prediction 154 175 - -
Dod08g1226 241 MobiDBLite consensus disorder prediction 40 57 - -
Dod08g1226 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 141 IPR013083 -
Dod08g1226 241 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Dod08g1226 241 CDD RING-H2_PA-TM-RING 93 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1226 Dod-Chr8 16592921 16594529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1226 39 234 C3H Transcription Factor Family AT2G34990 40.102 7.91e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1226 K10664 - sspl:121775559 151.754
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1226 08 16592921 16594529 Dod08g1226 08 16592921 16594529 ECH
Dod08g1226 08 16592921 16594529 Dod09g1259 09 33705036 33706193 PCT