Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1220 ATGGAATTTGACGAGCAAGAAGACCAAGAGGAAGAAATGGAGATCCCGGAGCCAGCGCCGGCGAGTTACGACTCACTCGGAAACTCGGCCAAACTCGGCGGTGCCGTGGGAGCTGCCGCCGCCTCCACCAGCATTGGACGGAAGGGGATGGCGGCGGCGGCAAGGTACCGGGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCACGCCGTCGACGGCTGCTGCGAGTTCATGGCCGCCGGTGAGGACGGAACGCTGGAGGGCGTGATCTGCGCCGCTTGTAACTGCCACCGGAACTTCCACCGCAAGGAGATCGACGGCGAGACCAGCCCCTTCCACCACCACCACCACCATCAACGTCCACAACCGCCTGCGCCGCAGCATCTCCACCAATTCTCCCCTTACTACCACCACCGCGGCCTGCCGTACCCCGCCGCCGGCGCTGGCTACCTTCACATGGCGACTCCTCAGATGGCGCAGCACCGGCCGCTGGCACTCCCTTCGGCGGCTGTCTCCGGCGGCGGACTCAGCAGGGAGGAGGAGGACATGTCGAACCCTAGCAGCAGCGGTGGTGGCGGCGGAGGTGGAACGACGAAGAAGAGGATCAGGACGAAGTTCACCCAGGAGCAGAAGGAGAAGATGCTGGCGTTCGCGGAGCAGGTTGGGTGGAGGATACATAAGCACGATGAGGCCTTGGTGGAGCAGTTCTGTGCCGAAGCTTGCGTGAAGAGGAACGTACTCAAGGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA 792 0.6237 MEFDEQEDQEEEMEIPEPAPASYDSLGNSAKLGGAVGAAAASTSIGRKGMAAAARYRECQKNHAVSFGGHAVDGCCEFMAAGEDGTLEGVICAACNCHRNFHRKEIDGETSPFHHHHHHQRPQPPAPQHLHQFSPYYHHRGLPYPAAGAGYLHMATPQMAQHRPLALPSAAVSGGGLSREEEDMSNPSSSGGGGGGGTTKKRIRTKFTQEQKEKMLAFAEQVGWRIHKHDEALVEQFCAEACVKRNVLKVWMHNNKNTLGKKP* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1220 263 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 55 106 IPR006456 -
Dod08g1220 263 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Dod08g1220 263 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 47 262 - -
Dod08g1220 263 MobiDBLite consensus disorder prediction 1 26 - -
Dod08g1220 263 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 200 257 IPR006455 -
Dod08g1220 263 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Dod08g1220 263 SUPERFAMILY Homeodomain-like 187 261 IPR009057 -
Dod08g1220 263 MobiDBLite consensus disorder prediction 108 133 - -
Dod08g1220 263 MobiDBLite consensus disorder prediction 1 17 - -
Dod08g1220 263 Gene3D - 185 260 - -
Dod08g1220 263 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 47 262 - -
Dod08g1220 263 MobiDBLite consensus disorder prediction 169 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1220 Dod-Chr8 16410526 16411833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1220 7 259 ZF-HD Transcription Factor Family AT4G24660 49.606 1.19e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dod08g1220 ZF-HD_dimer 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1220 - - ahf:112703242 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1220 08 16410526 16411833 Dod08g1220 08 16410526 16411833 ECH
Dod08g1220 08 16410526 16411833 Dod09g1241 09 33496890 33498177 PCT