Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1213 ATGGCACCCAGTTTCGACTGTGTTTCAAGCCTTCTCTGCGCAGAGGACAACAACATTTTCGACGAGAATGATGATTATGGGGGTTCTGTTGAGATGCTGGAGGACACGTGGCTTCATCCTAGTTATCATCAACGTGATCGAAACGGTGGTCAAAGCCATGACTTTGGTGACGGAAACCCATTTGTGCTGCCGGTGCTGAGTGATGAGTGTTTGATGCTAATGGTGAAAAAGGAGTGCGACCACTTGCCTGATGGGGATTACGTGAATAGGCTGAGGAGTGGGGATTTGGACTTTGCTGCCAGAAATGAGGCCATTCATTGGATTGAAAAGGTCCGAGAGCATTTTGGTTTTGGACCCCTCTGTGCATATCTATCCATAAACTACTTGGATCGTTTCCTTTCTGCATATGAATTACCAAAGCAAAGAGTATGGGCAATGCAGTTGTTGGCTGTGGCTTGCTTATCTCTTGCAGCCAAAATAGAGGAGACTGAAGTCCCACTGTGCCTTGATTTGCAGGTGAGAGAATCAAAGTTTGTCTTTGAATCTAAAACAATCCAGAGAATGGAGCTTCTTGTACTTAGCACATTGAGGTGGAGAATGCAAGCAATTACCCCTTTCTCCTTCATTGACTATTTTCTTTGCAAGATCAATGATGATCAAAGTCCAATTAGAGCTTCCATTATGAGATCCATCCAACTTATACTAAGTACTGCAAAAGGGATTGACTTCTTGGACTTTAGACCATCAGAGATTGCAGCAGCAGTGGGAATAGCTGTCATGGGGGAAACCCAAACAGCGCACACTGAGAAAGCAATTTCTGTTCTGATTCAACTCGTGGAAAAGGAGAGAGTCTTGAAGTGTGTCAAAATGATACAAGAGCTGTCATCAAACAGTGGTTCTGATAAGGATACAACAAGTGCTTCTGTTTCTGTCCCTTGCATGCCCCAGAGTCCAATAGGGGTGTTGGATGCTGTATGCTTAAGTTACAAAAGTGATGACACTAATAATGCTGGTTCATGTGTAAATTCCTCACATAATAATAGTCCAGATGCTAAAAGGAGGAAGCTGAACAATACCTGTGCAGCATCAGCATAG 1095 0.4365 MAPSFDCVSSLLCAEDNNIFDENDDYGGSVEMLEDTWLHPSYHQRDRNGGQSHDFGDGNPFVLPVLSDECLMLMVKKECDHLPDGDYVNRLRSGDLDFAARNEAIHWIEKVREHFGFGPLCAYLSINYLDRFLSAYELPKQRVWAMQLLAVACLSLAAKIEETEVPLCLDLQVRESKFVFESKTIQRMELLVLSTLRWRMQAITPFSFIDYFLCKINDDQSPIRASIMRSIQLILSTAKGIDFLDFRPSEIAAAVGIAVMGETQTAHTEKAISVLIQLVEKERVLKCVKMIQELSSNSGSDKDTTSASVSVPCMPQSPIGVLDAVCLSYKSDDTNNAGSCVNSSHNNSPDAKRRKLNNTCAASA* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1213 364 Gene3D - 74 289 - -
Dod08g1213 364 Gene3D - 84 201 - -
Dod08g1213 364 SUPERFAMILY Cyclin-like 58 200 IPR036915 -
Dod08g1213 364 Pfam Cyclin, C-terminal domain 203 302 IPR004367 -
Dod08g1213 364 Pfam Cyclin, N-terminal domain 71 200 IPR006671 -
Dod08g1213 364 CDD CYCLIN 101 193 IPR013763 -
Dod08g1213 364 ProSitePatterns Cyclins signature. 101 132 IPR006671 -
Dod08g1213 364 SMART Cyclin_C_2 203 331 IPR004367 -
Dod08g1213 364 SMART cyclin_7 106 194 IPR013763 -
Dod08g1213 364 MobiDBLite consensus disorder prediction 338 364 - -
Dod08g1213 364 PANTHER CYCLINS 1 357 IPR039361 -
Dod08g1213 364 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1213 Dod-Chr8 16253329 16255600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1213 74 333 Core Cell Cycle Gene Families AT2G22490 53.962 8.67e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1213 K18810 - gmx:100803873 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1213 08 16253329 16255600 Dod08g1213 08 16253329 16255600 ECH