Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1198 ATGCTTCCTTTTGGGAGATTCTATGGGTTCGAGAGCTGGCTAGACCATCATCACGACTCATCATCAGGGTATGTCCCCGAAGCACCGATGATCAAGGCTACGGATTTGAACGGTGGGAGATCGAAGGGGGACAGGAAATCAACGGAAGCATGCAAGAGCCACAGGGAAGCTGAGAGGAGACGCAGGCAGCGGATCAACGCCCACCTCTCCACCCTACGCTCTCTCCTCCCCAACACCGCCAAGTCAGATAAGGCGTCGTTGCTGGCGGAGGTGGTTCAGCACGTGAAGCGGCTAAGGAAGGAAGCCGATGACGTGGCGCGAGACTCGTCGCGCGAACCCGGTTCGGTTCAGTCCGTAGCCGAAACCGAACCGTGGCCGTTTCCGGGTGAGTCCGACGAGGCAACACTAAGCTATTGCGAAGGAGGAGAGGAGGGTGGTGGGGAACCGAAACGGATGAAAGCGACGCTGTGCTGCGAGGACCGGCCGGGTCTGAACCGGGACCTGACAAACGCGATCCGGTCGGTCCGGGCAAAGGCGGTTCGGGCCGAGATGATGACTGTTGGGGGCCGAACTAAGAGCGTTGTGGTGATGCAATGGCCTGATGGTGGTGGTGGTGGTGCTGATTCGAACGAGGAGGTGGAGGTTGGAGCGCTGGAACGGGCTTTGAAGGCGGTGATAGAGAATCGGGCTTTAGTGGGCTCTGGGATGGGCCGGATCCTGTTGGGCCAGAAGCGGGCTCGGGATAGTTATGGTTCTCTCGATGAGGTTGACTACGCCTTGTTGTTGAAGACCGGTGCTAACTCCTGA 807 0.5886 MLPFGRFYGFESWLDHHHDSSSGYVPEAPMIKATDLNGGRSKGDRKSTEACKSHREAERRRRQRINAHLSTLRSLLPNTAKSDKASLLAEVVQHVKRLRKEADDVARDSSREPGSVQSVAETEPWPFPGESDEATLSYCEGGEEGGGEPKRMKATLCCEDRPGLNRDLTNAIRSVRAKAVRAEMMTVGGRTKSVVVMQWPDGGGGGADSNEEVEVGALERALKAVIENRALVGSGMGRILLGQKRARDSYGSLDEVDYALLLKTGANS* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1198 268 PANTHER OS09G0463900 PROTEIN 31 248 - -
Dod08g1198 268 Pfam Helix-loop-helix DNA-binding domain 51 98 IPR011598 GO:0046983
Dod08g1198 268 SMART finulus 55 104 IPR011598 GO:0046983
Dod08g1198 268 PANTHER TRANSCRIPTION FACTOR BHLH30 31 248 IPR045847 GO:0003700|GO:0006355
Dod08g1198 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 108 IPR036638 GO:0046983
Dod08g1198 268 MobiDBLite consensus disorder prediction 34 62 - -
Dod08g1198 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983
Dod08g1198 268 Coils Coil 88 108 - -
Dod08g1198 268 MobiDBLite consensus disorder prediction 38 62 - -
Dod08g1198 268 Gene3D - 44 107 IPR036638 GO:0046983
Dod08g1198 268 MobiDBLite consensus disorder prediction 101 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1198 Dod-Chr8 15875211 15877036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1198 44 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 45.652 3.10e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod08g1198 HLH 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1198 - - aip:107608273 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1198 08 15875211 15877036 Dod08g1198 08 15875211 15877036 ECH