Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1196 ATGGTGAGGCAGAAGATCAAGATCAAGAAGATTGACAACGTGACAGCGAGGCAAGTGACGTTCTCAAAGAGGAGGAGAGGGATCTTCAAGAAAGCTCAAGAGCTCTCTGTGCTGTGTGATGCTAAGGTTGCTCTCATTATTTTCTCTTCCACGGGGAGGCTCTTTGAATACGCCAGCTCCAGCATGGAGGACGTAATTGCAAGGTATAAACTGCACGTGCATGAGATAAACGAATTGGATAGGCCCCTAGAACTACAGTTCTCTCATTCATTTCAGCAAGGGAATAGCAATAATGCTGAATTGCTTAAGGAAGTTGCTGATAAAACCCAACAACTAAGGCACATGAAAGGTGAGGATTTTCAAGGGCTAAGCTTAGATGACTTGTTGCAACTGGAGAAAACACTTGAAGCAGGACTCAAGCGGGTGATTGAGACAAAGGAAAAGCGGATTAAGGATGACATTGTAGCTCTTGAGAAAAAGTGGTTCGAGTTAGAAGACGAGAACAAGCAGTTAAAACAAAAGATGGCTATGCTGCATATGGAAAAAAACCCTTTACTGGTGGACTCGGATATTGCCGTGCAAGAAGTTGTCTCATCAGAGTCTATGAATAATGGCTGCAGCTGCATCACTGGCCCTTCTCTTGAGGGTGATTCCTCTGACACATCTCTTAAGTTAGGGTTGCCTTTCCCTAATTGA 696 0.4411 MVRQKIKIKKIDNVTARQVTFSKRRRGIFKKAQELSVLCDAKVALIIFSSTGRLFEYASSSMEDVIARYKLHVHEINELDRPLELQFSHSFQQGNSNNAELLKEVADKTQQLRHMKGEDFQGLSLDDLLQLEKTLEAGLKRVIETKEKRIKDDIVALEKKWFELEDENKQLKQKMAMLHMEKNPLLVDSDIAVQEVVSSESMNNGCSCITGPSLEGDSSDTSLKLGLPFPN* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1196 231 Coils Coil 154 174 - -
Dod08g1196 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Dod08g1196 231 SUPERFAMILY SRF-like 3 72 IPR036879 GO:0003677|GO:0046983
Dod08g1196 231 Coils Coil 98 118 - -
Dod08g1196 231 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 225 - -
Dod08g1196 231 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Dod08g1196 231 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Dod08g1196 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod08g1196 231 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod08g1196 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod08g1196 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod08g1196 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod08g1196 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod08g1196 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod08g1196 231 Pfam K-box region 95 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod08g1196 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod08g1196 231 MobiDBLite consensus disorder prediction 211 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1196 Dod-Chr8 15817895 15834978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1196 1 229 MADS-box Gene Family AT2G22540 51.230 6.32e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod08g1196 K-box 6.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1196 - - tcc:18591803 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1196 08 15817895 15834978 Dod08g1196 08 15817895 15834978 ECH