Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1195 ATGGGTGGTGCAACTTCTTTCAAGCCAATATTCAACGTCACATTCCCCTTCTTCTTCGTCATCACCATCACCACCACCTTAACCTTAATTGGCCCCTTGATCGTTGCAGAAACTGACGACGATTCTAGAGAAACCCCTCCAATCCCTAGTCTCGAAGACAACAACGGCGCCACCATTGCCGCCGTCGCTACACCACCGCCACCCTCGGACGGATCCACAAGAAACTCTGGCCATTTCAAGAGACGATCAGATCCGAGCACAGTCGTAGTAGTCGGTGCTTTAACCACCATGTTCTCTTTCACGTTCCTCCTTCTTCTCTACATCAAGAACTGCAATGGCGGGAATGTTCAGGGAAATGGAAATAACCAAGAAGTGGCTTCGTTGGACGCGAGAATGAACTCCGGCATCAATCGTGCCATCGTGGAGCTGCTACCAATCTTCCGATTCAGATCACTGAGCGGAAAGAAGGAAGGTTTGGATTGTGCAATTTGCCTGATGAGGTTCGAGGACCCCGAGGTCCTCCGGTTGCTGCCGAAGTGCAAGCATGCCTTCCACGTGGAATGCGTGGACAAGTGGCTCCACGCGCATTCTACTTGCCCTCTCTGTCGCTACAAGGTCGAATCCAAAGACATCGCTACGCGACAAAGAGAGAAAGAAACTGAGGAGGAGCAGGAGGAGCAGGAGGAAGAAGAAGAAGAACGATTTGACATAGAAAGCGGCACACGGCGCGTCTCCGGGAGGCACTCATCGGTAATGGGAGAAAAGGACAGAGTGTTCTTCGAGATTGTTATGCAGGATTCAGATGAGAACAAAACGACGTCGTCCTCTCGAAGCAAGTCTTTGGATGATGCTTCAAGAACCTCTGGGGGAAACTTTGTGTGTCCCAGAAGGGATGACAAGTTGTTGAAGCAACAAAACAACAACAACAACAGCAACAACGACAACACACGCATTTCACAACACAAGTTGGAGCATCGTATAATTATCGACTGCCCTTCTTCTTCTTCTTCTACTAATTATAACAGTGACGTTGGTTCCCACCAGAATTTGTGGAGCGAGGCTAGGCCGTCTAATCTGTTGTATCTAACATCCGAGATGATCACTCGCCATGCCTCTATCTTGCAACGACATCGACATAGCATGCAGGAACCACCACGGCAATGGAGCGCACGCAGAGCAAGAAGAATGGTTCATGGCCACGCCGTTAGCGATGGGAGTGAAAACATTGGTAGCAATGGTGGAGGTAGCGTGTATTTGAGGAGTGTTTCGGAGATAACGGGGTTGAGAAGGTTTTTGAGTGGTGGGAGTGGGAGGAGCAGAAACGGAGGGAGGGAAAGGCAGCATGGCGGTCGGGAAGAGCAAGATAGACGACAATATGAAGGGGTGGTTACGAGGTGGTTGGCTTGGATTTTGAGGTCGCAGAAGCCGCGGGGAGATGTACGGTAG 1446 0.5041 MGGATSFKPIFNVTFPFFFVITITTTLTLIGPLIVAETDDDSRETPPIPSLEDNNGATIAAVATPPPPSDGSTRNSGHFKRRSDPSTVVVVGALTTMFSFTFLLLLYIKNCNGGNVQGNGNNQEVASLDARMNSGINRAIVELLPIFRFRSLSGKKEGLDCAICLMRFEDPEVLRLLPKCKHAFHVECVDKWLHAHSTCPLCRYKVESKDIATRQREKETEEEQEEQEEEEEERFDIESGTRRVSGRHSSVMGEKDRVFFEIVMQDSDENKTTSSSRSKSLDDASRTSGGNFVCPRRDDKLLKQQNNNNNSNNDNTRISQHKLEHRIIIDCPSSSSSTNYNSDVGSHQNLWSEARPSNLLYLTSEMITRHASILQRHRHSMQEPPRQWSARRARRMVHGHAVSDGSENIGSNGGGSVYLRSVSEITGLRRFLSGGSGRSRNGGRERQHGGREEQDRRQYEGVVTRWLAWILRSQKPRGDVR* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1195 481 CDD RING-H2_PA-TM-RING 160 203 - -
Dod08g1195 481 MobiDBLite consensus disorder prediction 214 250 - -
Dod08g1195 481 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Dod08g1195 481 SUPERFAMILY RING/U-box 156 209 - -
Dod08g1195 481 MobiDBLite consensus disorder prediction 441 457 - -
Dod08g1195 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 214 IPR013083 -
Dod08g1195 481 Pfam Ring finger domain 160 203 IPR001841 -
Dod08g1195 481 Coils Coil 209 238 - -
Dod08g1195 481 MobiDBLite consensus disorder prediction 39 82 - -
Dod08g1195 481 PANTHER RING-H2 FINGER PROTEIN ATL43 64 474 - -
Dod08g1195 481 MobiDBLite consensus disorder prediction 267 318 - -
Dod08g1195 481 MobiDBLite consensus disorder prediction 430 457 - -
Dod08g1195 481 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 64 474 - -
Dod08g1195 481 MobiDBLite consensus disorder prediction 236 250 - -
Dod08g1195 481 SMART ring_2 161 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1195 Dod-Chr8 15799529 15800974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1195 50 469 C3H Transcription Factor Family AT5G05810 36.323 1.15e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1195 K19041 - cam:101490448 238.81