Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1183 ATGGAACCAGCAATGTACGGACACGCCCAGCCTGTGAACATGACCGGCCAGATCGGCGCCGGCGAGAGCGACGATGGCTCCGGTGGGGGCGACATCGACGGCCACCACATTCAGTACGAAACTCACGCCCTTGACGACGGTAGTGGTGGCGGAGGAGGAGCCGTTGGTGGTGGCCACGATTTATCTATTCAACGCTGCGACGATTCTAGCCAGCTCACTCTGTCGTTCCGTGGCCAAGTCTATGTTTTCGATTCTGTTACACCAGATAAGGTTCAAGCTGTGTTGTTACTGTTGGGTGGATGCGAACTACCTTCAGCAGCTTCGCCATGTGTAGATGCAACGCCTCAACAAAATCAGAGGGGGTCAATGGAATTTCCTGCAAGGTGTAGTCAGCCACAGCGAGCGGCATCGTTAAATAGGTTCCGGCAGAAGAGGAAAGAGCGTTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCGCTCAGGATGCACCGTAACAAGGGTCAATTTACTTCATCTAAAAAACAAGATGGAGCTAATTGGGGTACAGACCAGGAGTCCGGACAGGATGATAATCAATTGGAAACCTCATGCGTGCATTGTGGCATAAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGATCACTTTGCAACGCTTGTGGGCTTTTTTGGGCAAATAGGGGTTTTTTGAGAGACCTTTCTAAAAGAAATCAGGAACACTCTCTTGCACCAGCTGAGCAGGTTGATGAAGGTAATGAGTCAGACTGTCGGACTGCCATCCCTGCACATAACAATATTGCTGCTTTCTCTGGTAATGAAAACCAAGCTTTGGTAGCTGATCGTTGA 870 0.4977 MEPAMYGHAQPVNMTGQIGAGESDDGSGGGDIDGHHIQYETHALDDGSGGGGGAVGGGHDLSIQRCDDSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELPSAASPCVDATPQQNQRGSMEFPARCSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANWGTDQESGQDDNQLETSCVHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGFLRDLSKRNQEHSLAPAEQVDEGNESDCRTAIPAHNNIAAFSGNENQALVADR* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1183 289 MobiDBLite consensus disorder prediction 1 35 - -
Dod08g1183 289 Pfam GATA zinc finger 201 236 IPR000679 GO:0006355|GO:0043565
Dod08g1183 289 CDD ZnF_GATA 200 246 IPR000679 GO:0006355|GO:0043565
Dod08g1183 289 PANTHER GATA TRANSCRIPTION FACTOR 28 55 268 IPR045280 GO:0006355
Dod08g1183 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 246 - -
Dod08g1183 289 SMART tify_2 65 100 IPR010399 -
Dod08g1183 289 Pfam CCT motif 134 176 IPR010402 GO:0005515
Dod08g1183 289 Gene3D - 191 250 IPR013088 GO:0006355|GO:0008270
Dod08g1183 289 MobiDBLite consensus disorder prediction 175 196 - -
Dod08g1183 289 Coils Coil 287 289 - -
Dod08g1183 289 Pfam tify domain 69 99 IPR010399 -
Dod08g1183 289 SMART GATA_3 195 248 IPR000679 GO:0006355|GO:0043565
Dod08g1183 289 MobiDBLite consensus disorder prediction 167 196 - -
Dod08g1183 289 ProSiteProfiles GATA-type zinc finger domain profile. 195 254 IPR000679 GO:0006355|GO:0043565
Dod08g1183 289 ProSiteProfiles CCT domain profile. 134 176 IPR010402 GO:0005515
Dod08g1183 289 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Dod08g1183 289 ProSitePatterns GATA-type zinc finger domain. 201 228 IPR000679 GO:0006355|GO:0043565
Dod08g1183 289 PANTHER GATA TRANSCRIPTION FACTOR 25 55 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1183 Dod-Chr8 15460621 15466742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1183 11 288 Tify Gene Family AT4G24470 48.544 1.81e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod08g1183 CCT 2.5e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1183 - - pvu:PHAVU_008G182900g 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1183 08 15460621 15466742 Dod08g1183 08 15460621 15466742 ECH