Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1176 ATGTCATCACAAGCAGTGCAGTTGCGTGTCGAAGACAGTCATGTGGTCATGGACAACGGCATACTTCAAGTGTATTTGTCCAATCCTGGTGGAGTTGTCACCAGAATACAATATAATGGCATTGATAATCTCTTTGAAGCTCAGAACGAAAGTGGTAACAGAGGGTATTGGGACCTTGTTTGGAGTAAAGCAGGGAGTACAGGAACAACCGGCATACAAGAGCGGATTTTAGGAACAAAATTTGATGTTATAGTGGAAAATGAAGAACAGGTTGAAGTCTCGTTTACAAAAATGTGGGATCCATCGATGGAGGGAATGCTTTCGCCTCTGAATATTGACATAAGGTATGTGATGCTGCGAAATTCCTCAGGCTTCTATAGTTATGCCATATTTGAACACATAAAGGAGTGGCCTGCTTTCAACATACCTCAAATTAGGATCGTTTTCAAGCTTCGGAAAGACAAGTTTCATTATATGGCCGTGGCTGATCATAGACAAAGATTCATGCCTCTCCCAGACGATCGATTACCTGGAAGAGGACAAGAACTCCTTCCCCCAGAAGCAGTTTTGTTGGTCAATCCCGTGGAGCCAGAGTTCAAGGGAGAGGTGGATGACAAGTATCAATACTCATGTGACAATAAAGATCTTAAGGTCCATGGGTGGATAAGCTCTGAATCCAAAACTGAACCGCCCATGGGGTTCTGGGTGATCTTACCCAGCAATGAGTTCCGATCTGGTGGCCTCATTAAACAAAACCTTACCTCCCATGTCGGCCCCATCAGCCTCGCAATGTTTCTTAGTGCTCATTACGCGGGAGAGGATATCGTTCTGAAACTTCAGCCAAATGAGCCGTGGAAGAAAGTTTTCGGGCCAACTTTTATCTATCTCAACACTTTGTTGGATAGTGACGACGCACTGGAGCTCTGGGAAGATGCCAAAGATCAGATGACCGAGGAAGTTCAAAATTGGGCCTATGATTTTCCAGCTTCAGAGGATTTTCAGAAGACTAGCCAACGGGGGAGTGTTCGTGGCAAGTTACTAGTTAGAGACAGGTGCCAAAGTGATGATTACATAGTAGCAAGTGGTGCATATGTAGGACTAGCTCCACCTGGAGACGCTGGATCCTGGCAAAGAGAATGCAAGGGATACCAATTCTGGACTAGAGCAGACGAGGAAGGCTACTTCTTAGTCGAACATATACGTAGTGGGGATTACAATTTCTATGCATGGGTTCCAGGTTTCATTGGAGAGTATTGGAACAGTGCTGCCCTCACCATAACCCCAGGTTGTGAAATAAACTTTGGTGACATTATTTTTGAGCCCCCAAGAGATGGTCCAACATTATGGGAGATAGGAATTCCCGATCGCTCTGCTGCTGAGTTCTATGTTCCTGATCCTAATCCAAAGTACATAAACAAGCTTTATGTCGAACATCCAGACAAGTTTAGGCAATATGGGCTGTGGGAAAGATACGCGGATTTATACCCAAATGAAGATTTGATTTATACAGTTGGTGTCAGTGACTACACAAAAGATTGGTTCTTCGCACAGGTCACCAGGAAGAAAGAAGATGGCAATTACCAAGGAACTACATGGCAAATTAAGTTCAATCTTGATTATGTGGAGGCAAGTGGAATCTATAAGTTGCGAATTGCTCTTGCAAGTGCAAATGTCTCTGAATTACAGGTTAGGGTGAATGATGTAAAACAAGATCCTCCACTATTTACTACGGGGGTAATTGGGAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTCTACTGGCTATTCAGCATCGATGTGCAAGCTCTTCTGCTAAAAGAAGGCGATAATACTATACATCTAACACAGGCTATAGCTTCAGACCCCTTGGCCCTCTTCCAGGGGGTAATGTATGACTATATTCGTTTGGAAAGCCCCAGCCGTTCTCTTCTATAA 1941 0.4395 MSSQAVQLRVEDSHVVMDNGILQVYLSNPGGVVTRIQYNGIDNLFEAQNESGNRGYWDLVWSKAGSTGTTGIQERILGTKFDVIVENEEQVEVSFTKMWDPSMEGMLSPLNIDIRYVMLRNSSGFYSYAIFEHIKEWPAFNIPQIRIVFKLRKDKFHYMAVADHRQRFMPLPDDRLPGRGQELLPPEAVLLVNPVEPEFKGEVDDKYQYSCDNKDLKVHGWISSESKTEPPMGFWVILPSNEFRSGGLIKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFIYLNTLLDSDDALELWEDAKDQMTEEVQNWAYDFPASEDFQKTSQRGSVRGKLLVRDRCQSDDYIVASGAYVGLAPPGDAGSWQRECKGYQFWTRADEEGYFLVEHIRSGDYNFYAWVPGFIGEYWNSAALTITPGCEINFGDIIFEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVEHPDKFRQYGLWERYADLYPNEDLIYTVGVSDYTKDWFFAQVTRKKEDGNYQGTTWQIKFNLDYVEASGIYKLRIALASANVSELQVRVNDVKQDPPLFTTGVIGKDNAIARHGIHGLYWLFSIDVQALLLKEGDNTIHLTQAIASDPLALFQGVMYDYIRLESPSRSLL* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1176 646 Gene3D - 335 433 - -
Dod08g1176 646 CDD RGL4_C 449 639 - -
Dod08g1176 646 Pfam Polysaccharide lyase family 4, domain III 447 638 IPR029411 -
Dod08g1176 646 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Dod08g1176 646 SUPERFAMILY Starch-binding domain-like 337 434 IPR013784 GO:0030246
Dod08g1176 646 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Dod08g1176 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 643 - -
Dod08g1176 646 CDD RGL4_N 8 298 - -
Dod08g1176 646 Gene3D - 5 279 IPR014718 GO:0030246
Dod08g1176 646 SUPERFAMILY Galactose-binding domain-like 444 639 IPR008979 -
Dod08g1176 646 PANTHER LG27/30-LIKE GENE 1 643 - -
Dod08g1176 646 CDD RGL4_M 338 437 IPR029413 -
Dod08g1176 646 Gene3D - 445 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1176 Dod-Chr8 15262403 15269162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1176 1 642 Polysaccharide Lyase AT1G09890 63.764 0.0 854
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1176 K18195 - gmx:100815677 1139.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1176 08 15262403 15269162 Dod08g1176 08 15262403 15269162 ECH