Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1174 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCGACGAGCAGGCAAGTGACGTTCTCGAAGCGAAGGAATGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCCTGTGCGATGCTGAGGTTGGAATCATGATCTTCTCCAGCACCGGCAAACTCTACGATTTCTCCAGTTCCAGCATGAAATCAGTTATCGACCGATACCACCAAGCAAAAGAAGAAAATAATCAACCTGAAAGTTCGGAGTCCGAAGTGAAGTTTTGGCAAAGGGAGGTGGCAATGTTACGGCAACAACTGCTAAATTTGCAAGAAAGCCATCGGCAAATTATGGGGGAAGAACTGTCAGGTTTGACAGCCAAAGAATTACAGAGTTTGGAGAGCCAACTGGAGATTAGCCTTCGCGGTGTCTGTGCACAGAAGGACCAACTTTTAATGGATGAAATACAGGAACTAAATCGAAAGGTCAGTGTTGAAAGAGAAAATCTAACGGCTTCACCATACATTTAA 510 0.4529 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGIMIFSSTGKLYDFSSSSMKSVIDRYHQAKEENNQPESSESEVKFWQREVAMLRQQLLNLQESHRQIMGEELSGLTAKELQSLESQLEISLRGVCAQKDQLLMDEIQELNRKVSVERENLTASPYI* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1174 169 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Dod08g1174 169 Pfam K-box region 81 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod08g1174 169 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 158 - -
Dod08g1174 169 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Dod08g1174 169 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Dod08g1174 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod08g1174 169 ProSiteProfiles K-box domain profile. 86 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod08g1174 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod08g1174 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod08g1174 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod08g1174 169 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod08g1174 169 Coils Coil 86 106 - -
Dod08g1174 169 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod08g1174 169 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 158 - -
Dod08g1174 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1174 Dod-Chr8 15197229 15224278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1174 1 163 MADS-box Gene Family AT4G37940 68.293 1.15e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod08g1174 K-box 5.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1174 K09264 - rcu:8280333 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1174 08 15197229 15224278 Dod08g1174 08 15197229 15224278 ECH