Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1162 ATGGAGCTCTATGATCATGATTTCTTGGAGGAGTTATTGTCTCTAAGAAGAGAAACATGGGACACCAATCCATTTTCAGAAGAAAACCATCTCTTCTCTAATAGCTGGAGTTTTGAATCTTTTGATCAAAATTCTCCTGCTCTTGTTCCAAACTCATACCCTTGCCAAGTTCCTCAAAGTTACAATGACCACACCTTCAATGAAATCTATTGTTCCTTACTTGAAGAATTTTCTGCACCACAGATCTTCGGCTCATCCTACAACAGCTTTGATACACCACTTAACACCCCACCATTTCTGGCTCAAGAAGATAATCATCCACTTTCTATGATGGAAGAAGAGGATCCCGCAGGTTTGCTTGGGGAAGAGCTTCATAGTTTGGAGCTGCAAACCGTGTGCAAGATTGAGCCAACCCAATCTTCTGAAGTGCCAATTTTCAACACTACTGGTACATGTACGGAAAGAAAGAATCGAGCAAAGAAGCTGCAGGGACAGCCCTCCAAGAATCTAATGGCTGAGAGGAGGAGGAGAAAGAGACTAAATGACCGGCTCTCCATGCTAAGATCAATTGTCCCTAAGATAAGTAAGATGGACAGAACATCCATACTTGGAGACACTATTGATTACATGAAGGAACTCCTAGAGAAGATCAATAGTTTGAAACAAGAAATAGAAGTGGATTTAAATGGCATTTTCAAGGATGTAAAGCCAAATGAAATCTCAGTCAGAAATTCTCCCAAGTTTGATGTGGAGAGGAGGAATATCAACACAAAGGTTGAGATCTGCTGTGCAGGGAAATCGGGCCAGTTACTATCTACAGTAAACACTTTGGAAGCATTGGGCCTTGAGATTCAACAGTGTGTTATTAGTTGTTTCAACGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATTGGAGCAGAAGACAATTATGAGTTCTGAAGATATAAAACAAGCACTATTGAGAAGCGCAGGATATGGAGGAAGATGTTTCTAA 996 0.4086 MELYDHDFLEELLSLRRETWDTNPFSEENHLFSNSWSFESFDQNSPALVPNSYPCQVPQSYNDHTFNEIYCSLLEEFSAPQIFGSSYNSFDTPLNTPPFLAQEDNHPLSMMEEEDPAGLLGEELHSLELQTVCKIEPTQSSEVPIFNTTGTCTERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINSLKQEIEVDLNGIFKDVKPNEISVRNSPKFDVERRNINTKVEICCAGKSGQLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELEQKTIMSSEDIKQALLRSAGYGGRCF* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1162 331 PANTHER DNA BINDING PROTEIN 3 330 - -
Dod08g1162 331 Coils Coil 210 230 - -
Dod08g1162 331 Gene3D - 153 228 IPR036638 GO:0046983
Dod08g1162 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Dod08g1162 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 330 - -
Dod08g1162 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 226 IPR036638 GO:0046983
Dod08g1162 331 Pfam Helix-loop-helix DNA-binding domain 170 213 IPR011598 GO:0046983
Dod08g1162 331 SMART finulus 170 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1162 Dod-Chr8 15005711 15007706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1162 153 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.556 8.24e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod08g1162 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1162 - - gmx:100814388 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1162 08 15005711 15007706 Dod08g1162 08 15005711 15007706 ECH