Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1160 ATGTCTCAGCCGCTACGCGGCGTCAGGGATGAGGAAGGTCAAAGCCATGTGACTTTGTTGGTTTCTTCCTCGACCACAATGGAAAGTGTGTGTCTGAATAGCTCGAAATTGAAAGAGAGGAACTACATGGGATTATCTGATTGTTCTTCAGTGGACAGCGCAGTTCCATCATTCTCAGATGAGAGTAAAAGTAATCTGAACCTGGAAGCCACCGAGCTAAGGCTGGGGCTTCCAGTATCTCAGTCTCTTGAAAGAGACTCAGATCTTCGCTTGAGAAGTTCAACTCAATTCGATGAGAAACCTCTGTTTCCTTTGCGTCCTGCAACCGATGATCATCATTACTCATCGAAGCCTGCTGTTTTGGGTAACAAAAGAGGGTTCTCTGATGCAATGAATGGGTTCTCAGAGGAGAAATTGCTTGTTAGTTCGGAGGTCAATACGATATTGCCATCTTCCAGGCCTTCTCCTAATGCAGGATTGAAACCGACCGCTATGCTTGAGAATGTCAGGACTCTACAAAAAGAAGTAGCAACAACCAAGGTGGGTCTTGAAAGGCCTCATGCTGTCAATGAAAGCAGACCAAGTCTTAATGGCTCTGTGAATACTAGTAGCAGTGCACCAGCTACCAAGGCACAGGTTGTAGGATGGCCTCCTATAAGGTCATTTAGGAAAAATTCATTGGCTGCTACTTCAAAGATTGTTGAAGAAGTAGATGGAAAAATGGGTTCTGGTGCACTGTTTGTCAAGGTCAGTATGGATGGTGCTCCGTACTTACGAAAAGTGGACTTGAAGAATTACCCTGCATATCCCGAACTTTCTTCTGCTCTGGAGAAGATGTTCAGCTCCCTTACCATAGGTCAATGTGGATCTCATGGAAGGGAGATGATGAATGAAATTAAGCTGAAGGACCTGCTTCATGGGTCAGAATACGTTCTTACTTATGAAGATAAAGATGGCGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGTAA 993 0.4491 MSQPLRGVRDEEGQSHVTLLVSSSTTMESVCLNSSKLKERNYMGLSDCSSVDSAVPSFSDESKSNLNLEATELRLGLPVSQSLERDSDLRLRSSTQFDEKPLFPLRPATDDHHYSSKPAVLGNKRGFSDAMNGFSEEKLLVSSEVNTILPSSRPSPNAGLKPTAMLENVRTLQKEVATTKVGLERPHAVNESRPSLNGSVNTSSSAPATKAQVVGWPPIRSFRKNSLAATSKIVEEVDGKMGSGALFVKVSMDGAPYLRKVDLKNYPAYPELSSALEKMFSSLTIGQCGSHGREMMNEIKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWE* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1160 330 MobiDBLite consensus disorder prediction 192 210 - -
Dod08g1160 330 ProSiteProfiles PB1 domain profile. 245 330 IPR000270 GO:0005515
Dod08g1160 330 SUPERFAMILY CAD & PB1 domains 241 330 - -
Dod08g1160 330 Pfam AUX/IAA family 71 330 IPR033389 -
Dod08g1160 330 Gene3D - 240 330 - -
Dod08g1160 330 PANTHER AUXIN-INDUCED PROTEIN 23 330 - -
Dod08g1160 330 MobiDBLite consensus disorder prediction 185 210 - -
Dod08g1160 330 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 330 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1160 Dod-Chr8 14939679 14940950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1160 248 329 B3 DNA Binding Superfamily AT2G46530 36.585 1.54e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod08g1160 AUX_IAA 2.8e-68 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1160 K14484 - gmx:100818881 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1160 08 14939679 14940950 Dod08g1160 08 14939679 14940950 ECH