Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1146 ATGGGTAGAAAGAAAAGTAAACCACATCGATCAGGCGGGATAATAATTGAAACAAATGTTACTGCTGAAGCAGAATTGGATAAGCAGAATGTTGTAGGAGTAGGTGAAGAAGGAAAGGATGATTTTGGTGAAGTTGATATACCCTATTTCGTTGAAGTTGACCGGTCAGGTTGGTTGTCGAGTGAGCACCTTGATATTTCTGAAGTCGTTTTGAGGGATTTAAATTTGAGGGAGTGTGGTTCTGATTTTGAACTTTCTGAGGATTTTTATCTGGATCCCAAGTACTCGTTAAGATTTCGGGTGTGCAATGTCAATAATGTTCTTGGTCGAATCAAATTAGGCCATTGGCCTGTGTTACCCTATACTGATATTCATCTAGAGTTTGTGAAAAGAGTTGCAGTGGATCATGTGGAAACATGTACATTGTTGTTGTCTGGGATTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTGTTCACTTGGCAAGTTTGAAGTTTTTTACACTGAGGCCAGTTCTTGGGATTACGCTTTCTGAAGACATTCATTCCCTCAGGGTAAGGGTTGAGATACTAAAGAGTTCCTTTGATGCATGCGAATCACTTCTTGATGTTTCTAGACAACTATGGAAAAGGAGCATGATGAATGTCATGTCTTGGCTACGTCCAGAAATAATGACTTCAGAAGTTAGGTATGGATTTGGTGGTTGTGTAAAAATGGAAGTTGATCCACAGACAGAGATGGGAGGTGAGACGTCCTACACCAGAAAATATGCAAGGTTTGATCCTGCTGGGTTTTATGAAGCCATTAAGCCATCAAAATCAGAGCCAATGCTCGAAGAAGACATACCCGGCTTACTTCCGGAGCTGAGGCCATATCAGCGGCGTGCAGCTTTCTGGATGGTACAACGGGAGAAACAGATAGAAGCAAGTCAGGGTGAAAGAGAAAGAATTCAGTTCCATTCTCCATTATGTGTGCCTGTGGATTTTCTGGATACAAGTTCTAAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGTATCTTTGCTCACCGCAAATCAGGATCTGGAAGTGATATACTAATTGATCCAGTTCCTCAAGTTAAGGGAGACCAAAAGGTCACTTTAAAAAGATTGAAAAGAGAGCGTGTGGAGTGCGTATGTGGAGCTGTGAGTGAAAGTCTCAAATATCATGGACTATGGGTTCAATGTGACATTTGTGATGCTTGGCAGCATGCAGATTGTGTTGGCTATTCAGCTAAAGGAAAATCACTGAAATCAAAACATGGAAATGAAACCAAGTCATATAAGACCACCATAGCTGTGAGGGATGGTGAATATGTATGTCAAATGTGCTCTGAGCTAATACAAGTTACCGAATCTCCTATCGCATCTAGTGCCACTCTTATTGTCTGCCCTGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGCCATACAAGCTCGGGCTCCTTGAAAACTTGTGTTTATGAAGGTGTGCGAGACACATCTTTCGCCAATACATCTCTAGCAGATATCAGTGAACTTGCCAGTGCTGACATTGTAATAACTACCTATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTGATAGACATGAAGGTGATCGACATGTTTTGAGATTTCAGAAAAGGTACCCAGTCACCCCAACTCTTCTTACTAGGATATACTGGTGGAGGGTTTGTTTGGATGAGGGTCAAATGGTGGAAAGTAATGCTGCTGCTGCCACTGAAATGGCTCTAAGACTCCATTCAAAGCATCGATGGTGCATTACAGGGACCCCAATTCAGCGCAAGCTTGATGATTTATATGGGCTTCTAAGATTCCTCAAAGCTAGTCCTTTCAATACATACAAGTGGTGGACTGAAGTTATTCGAGATCCTTATGAGAGGGGAGATATGGGAGCTATGGATTTTACACACACAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCCAATGAATTGGACCTTCCCTCTCAGGAGGAGTGCCTCTCTTGGCTTACACTCTCACCAGTAGAAGAACACTTCTACCAAAGGCAACATGAAACCTGTGTCAGAGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAGGGGCCCAGGTTCTGTATCTTTGAATGGTTTGTCAGATTCTTTAATCACTCACTCAGAGGCAGGGAAATTACTGAATGCTCTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGCTCTGGGCTGCGATCCCTGCAGCAGTCACCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGTAAGACTAAGGTAGAAGGTGAGGAAGCTCTCAGAAGGTTAGTTGTTGCTCTGAATGGGCTTGCAGCAATAGCTATAATACAGAAAGAATTTTCTCAAGCTGCATTACTGTACAATGAAGCTATGACATTGGCTGAAGAGCACTGTGAAGATTTTCGCTTGGATCCTTTATTAAATATCCACATTCATCATAATCTTGCTGAAATACTCCCACAAGCTGCAGACCTTGCTCTGAGATTGTCCTCTAAAGGAAAGCGGTTCTCTCAAATTTCTGCAGTTAAGACAACCAGAAAGCATTTTATTGATGCGGTTGATCATTGTCTTTCAAAGAGGCAAAAAATAAGCGGCTGTAATGACACAAATTTTACAGTGGATTCTGCAGAACCATCAGATGCCACATCCAGCCTATCAGAAAATGACTTAAATGAGGATCAGGATACTGGTGATGTAACAGCGTGTTCTGTCAAAACTCTGATGGCAGAATGTGAAGATTTAAAGCAGAAATACTTATCTATGTTCAGTTCAAAGCTATCTGCAGCTCAACAAGAGTTTCAGAATTCGTACATGCAGGTTTGTAATGGATTTAGTGACAGCAGAGCAGATCAAAATACATTCTGGTGGTTAGAAGCGCTTCATCATGCAGAACAGAACAAGGATTTCTCAACTGAGTTGACTAGAAAGATTGAAGAAGCCATTGCAGGATCTTCAAATAGTTCAAAGTCATCAAAAGTAGCTGCTCGTTTCCGGAGCATAATATCTCTCAAGTATGAAATTCAGACAAGTTTGGATCAGTTGGAGACCTCTCGCAAAGTGCTACTCGATCGACTGCTAGAAATTGACAAGACAATGGAAAATCCAAATGAAGAAGATATTGAACGTGTGGGCAAATGTCGAAATTGTCAACCTAGTTGTGATGGTCCCCCATGCATTTTGTGTGAACTAGATGAATTATTCAAGGATTATGAAGCTAGACTATTTGTTCTTAAGAATGAACGTGGTGGAATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAGAATTTTGCATTGAATCATTTCCTCTCAAAGCTATCACAATCTAATCAAAGATCAAAAGTATCTGAAATTGATAATGAAGAATCAAAGAAAAGGAATGCTGGACAAAGAGTTGTGGTTTCAAGATCAGCGTCTGAGTTGGAGCTTATTCTTGGAGTTATAAAGAACTATTGCAAGACTCGGTTAGGAAGGGACGTTGTCTCTGCAGCTATGAAGCATTTACATATTTTTGAGGGCATGAGGAAGGAGTTTGGCTATGCAAGGTCTTTGGCTTTGGCTCAAGCTCAGTATCTGCGTGCCCATGATGAAATAAAGATGGCTATTTCCCGTTTGCACTTAAGGGAAATTGAGAATGATAAGTCGCTTGATGCTTTGGGGGAAGACGAATTATTTGCAGCTAGCTCAAACTTCTCCCATGATAAGTTTATGTCGCTGACCTTGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTAGAATCGAAGCAAAAACTGCCATTGGGAAGTCCAGATAATTCTTCATTTGCTCAAGAGATGAATGCAACATCAAACTCCACAGAAGAGAGGGGTGCAGGCATATTTAAAGTTGATGAGGAAACATGCCCAGTTTGCCAAGATAAGCTTGGCAATCAGAAAATGGTATTTCAATGTGGGCATGTTACGTGCTGTAAATGTTTATTTGCTATGACTGAGGAAAGACTTCAACATAGCAAAATTCATAAGTGGGTGATGTGCCCAACATGTCGACAGCATACTGATTTTGGAAGCATTGCCTATGCTGTTGATGCACGCAATGAATCTTCTAATTCTTCAATGCTGCATAAAGTTGACAGCTGTGAAAAATTTGAAGCATCCATTACTGTTAAAGGTTCATATGGAACTAAGATTGAAGCAATCACAAGGAGAATCTTATGGATAAAGGCCACAGATCAAAAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGCACATGCCTTTGCTATGAATGACATTACATACATTCGGATGAAAGGAGGCAGGAAAGCACAAGTTGCCATCAGTGAATTTAGAGGACAACAGAATGGCAGGAAAGGATCTGAGAGGTCAGTTTCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACACGGAGCCAATGGCCTCAATCTTTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTACATCGTATTGGTCAAAAGAATAGGACCCTTATTCATCGTTTCATTGTCAAAGACACAGTTGAAGAAAGCATATATAAATTAAACAGAAGCAGGAGCAATCATTCCTTCATTAGTGGGAACACCAAAAATCAAGACCAACCTGTTTTGACCCTGAAGGATGTGGAATCCTTACTGTCAAGAGCACCATTAACGATGCCAGAAAGTGTTGAAAATCCTAATGCAGATTCTCTAAGGAACTTGCCACCATCGATGGCCGCAGCTATTGCTGCTGAGAGAAGACTCAATGAGCAAAGGACATGA 5013 0.4083 MGRKKSKPHRSGGIIIETNVTAEAELDKQNVVGVGEEGKDDFGEVDIPYFVEVDRSGWLSSEHLDISEVVLRDLNLRECGSDFELSEDFYLDPKYSLRFRVCNVNNVLGRIKLGHWPVLPYTDIHLEFVKRVAVDHVETCTLLLSGIFDGPDEGVSGLVHLASLKFFTLRPVLGITLSEDIHSLRVRVEILKSSFDACESLLDVSRQLWKRSMMNVMSWLRPEIMTSEVRYGFGGCVKMEVDPQTEMGGETSYTRKYARFDPAGFYEAIKPSKSEPMLEEDIPGLLPELRPYQRRAAFWMVQREKQIEASQGERERIQFHSPLCVPVDFLDTSSKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRKSGSGSDILIDPVPQVKGDQKVTLKRLKRERVECVCGAVSESLKYHGLWVQCDICDAWQHADCVGYSAKGKSLKSKHGNETKSYKTTIAVRDGEYVCQMCSELIQVTESPIASSATLIVCPAPILPQWHDEIIRHTSSGSLKTCVYEGVRDTSFANTSLADISELASADIVITTYDVLKEDLSHDSDRHEGDRHVLRFQKRYPVTPTLLTRIYWWRVCLDEGQMVESNAAAATEMALRLHSKHRWCITGTPIQRKLDDLYGLLRFLKASPFNTYKWWTEVIRDPYERGDMGAMDFTHTVFKQIMWRSSKEHVANELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRRGPGSVSLNGLSDSLITHSEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKVEGEEALRRLVVALNGLAAIAIIQKEFSQAALLYNEAMTLAEEHCEDFRLDPLLNIHIHHNLAEILPQAADLALRLSSKGKRFSQISAVKTTRKHFIDAVDHCLSKRQKISGCNDTNFTVDSAEPSDATSSLSENDLNEDQDTGDVTACSVKTLMAECEDLKQKYLSMFSSKLSAAQQEFQNSYMQVCNGFSDSRADQNTFWWLEALHHAEQNKDFSTELTRKIEEAIAGSSNSSKSSKVAARFRSIISLKYEIQTSLDQLETSRKVLLDRLLEIDKTMENPNEEDIERVGKCRNCQPSCDGPPCILCELDELFKDYEARLFVLKNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSNQRSKVSEIDNEESKKRNAGQRVVVSRSASELELILGVIKNYCKTRLGRDVVSAAMKHLHIFEGMRKEFGYARSLALAQAQYLRAHDEIKMAISRLHLREIENDKSLDALGEDELFAASSNFSHDKFMSLTLLSQIKGKLRYLKGLVESKQKLPLGSPDNSSFAQEMNATSNSTEERGAGIFKVDEETCPVCQDKLGNQKMVFQCGHVTCCKCLFAMTEERLQHSKIHKWVMCPTCRQHTDFGSIAYAVDARNESSNSSMLHKVDSCEKFEASITVKGSYGTKIEAITRRILWIKATDQKAKVLVFSSWNDVLDVLAHAFAMNDITYIRMKGGRKAQVAISEFRGQQNGRKGSERSVSKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNRTLIHRFIVKDTVEESIYKLNRSRSNHSFISGNTKNQDQPVLTLKDVESLLSRAPLTMPESVENPNADSLRNLPPSMAAAIAAERRLNEQRT* 1671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1146 1670 SMART ultradead3 285 658 IPR014001 -
Dod08g1146 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 686 IPR027417 -
Dod08g1146 1670 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Dod08g1146 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 481 IPR013083 -
Dod08g1146 1670 SUPERFAMILY RING/U-box 1353 1410 - -
Dod08g1146 1670 Pfam Helicase conserved C-terminal domain 1452 1575 IPR001650 -
Dod08g1146 1670 Gene3D - 1426 1650 IPR027417 -
Dod08g1146 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1351 1425 IPR013083 -
Dod08g1146 1670 SMART helicmild6 1483 1575 IPR001650 -
Dod08g1146 1670 ProSiteProfiles Zinc finger RING-type profile. 1358 1406 IPR001841 -
Dod08g1146 1670 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1645 - -
Dod08g1146 1670 MobiDBLite consensus disorder prediction 932 954 - -
Dod08g1146 1670 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1455 1626 IPR001650 -
Dod08g1146 1670 SMART ring_2 1358 1405 IPR001841 -
Dod08g1146 1670 Gene3D - 482 709 IPR038718 -
Dod08g1146 1670 SUPERFAMILY FYVE/PHD zinc finger 411 484 IPR011011 -
Dod08g1146 1670 Gene3D - 346 397 IPR038718 -
Dod08g1146 1670 CDD DEXQc_SHPRH 289 688 - -
Dod08g1146 1670 CDD SF2_C_SNF 1449 1586 - -
Dod08g1146 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 1641 IPR027417 -
Dod08g1146 1670 SMART PHD_3 414 482 IPR001965 -
Dod08g1146 1670 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1146 Dod-Chr8 14636232 14665589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1146 489 782 RAD5 or RAD16-like Gene Family AT5G22750 31.104 1.54e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod08g1146 SNF2_N 9.8e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1146 K15710 - gmx:100776659 2778.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1146 08 14636232 14665589 Dod08g1146 08 14636232 14665589 ECH