LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod08g1142	ATGGTTTCCTCTCAGTTCTCTACCTCAAATGGGAATAGTCCACAGAGGCCATTCCTGAACCAGTTGCTTCTTCCGAGTGGACCACCTGATGTTTTGCCTTCTGATTATGTGGACATTGAATTTTCTGGCGTGTTTGGTCCAGCTCCTATTGAAGCCTCAATGGCAGTGAGCTCTGAGAAACCTGGGAATTTGGTGGTTGCACCAGTTTCAAGTGAAAAGGTTTACAATGATCCTTCTGCCATTCACATCCGCTCCCATTCTTTGCTCGCCCCCACTCTGTATATCGATGATCAGTCCTCCTCGGCGCTTCGCAAGCTCACATTACAAGAGACAGGAGATGCATTGGAGCTAGTGGAGAAGGGAAATTCTGTTGACAATGCTGCTGTAAAGGAAAACAACCTAGAATTCAGCAGTTGCAATCTGAATCATCAGGCTATAGGAGTTGAGGATTTCGAAGTCTTGAAGGTTGTCGGGCAAGGTGCTTTTGGTAAGGTGTATCAGGTAAGGAGGGCTGGTGCTTCAGAAATATATGCTATGAAGGTCATGCGCAAGGATAAGATTATGCAGAGAGATCAAGCTGAATATGTAAGATCTGAAAGGGATATACTGACAAAGGTGGACCACCCTTTTATCGTGCGGCTCAAATACTCATTCCAAACCAAATATAGGTTGTACCTCGTGCTTGATTTTGTCAATGGTGGTCACCTTTTCTTTCAGCTCTATCGCCAAGGCCTATTCAGGGAGGATTTGGCGCGCTTCTACGCCGCAGAGATTATTAGTGCTGTTTCTCATCTTCATGCAAATGGTATAATGCACAGGGATCTCAAACCTGAAAATATTCTTCTCGATGCAGATGGTCATGTTGTGTTAACGGATTTTGGCTTGGCTAAGCAATTTGATGAGACTGCAAGATCAAATTCTATGTGTGGAACTTTAGAGTACATGGCCCCTGAAATTGTTATCGGGAAGGGTCATGATAAGGCAGCGGATTGGTGGAGTGTGGGAATTCTAATGTACGAAATGCTTACAGGGAAGCCTCCTTTTGCTGGTGGAAATAGACATAACATACAGCAGAAGATTATAAAAGATAAAATCAAGCTCCCTGCATTTTTGTCGAGTGAGGCACATTCACTGTTAAAAGGGCTGCTGCAGAAAGATGCCAGCAAACGCCTTGGCACTGGACCAAATGGCAGTGGGGAGATAAAAAGCCACAAGTGGTTTAAGTCAGTCAACTGGAAGAAACTGGAAGCCCGTGAAATTAGGCCAAGCTTTGTCCCAGAAGTTGCTGGGAAGCACTGTGTTGCTAACTTTGAGGAGAAATGGACTAACATGCCTTTGCTAGATTCGCCGGCTGCTAGTCCCAAAACAGATGAGAAGACCTTCAAGAGGTTCTCCTATGTTAGTTCTCCTGCTCTATGCCCTGGGAGAAATGACTGA	1437	0.4502	MVSSQFSTSNGNSPQRPFLNQLLLPSGPPDVLPSDYVDIEFSGVFGPAPIEASMAVSSEKPGNLVVAPVSSEKVYNDPSAIHIRSHSLLAPTLYIDDQSSSALRKLTLQETGDALELVEKGNSVDNAAVKENNLEFSSCNLNHQAIGVEDFEVLKVVGQGAFGKVYQVRRAGASEIYAMKVMRKDKIMQRDQAEYVRSERDILTKVDHPFIVRLKYSFQTKYRLYLVLDFVNGGHLFFQLYRQGLFREDLARFYAAEIISAVSHLHANGIMHRDLKPENILLDADGHVVLTDFGLAKQFDETARSNSMCGTLEYMAPEIVIGKGHDKAADWWSVGILMYEMLTGKPPFAGGNRHNIQQKIIKDKIKLPAFLSSEAHSLLKGLLQKDASKRLGTGPNGSGEIKSHKWFKSVNWKKLEAREIRPSFVPEVAGKHCVANFEEKWTNMPLLDSPAASPKTDEKTFKRFSYVSSPALCPGRND*	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod08g1142	478	CDD	STKc_AGC	157	407	IPR045270	GO:0004674\|GO:0005524
	Dod08g1142	478	ProSiteProfiles	AGC-kinase C-terminal domain profile.	408	476	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Dod08g1142	478	Pfam	Protein kinase domain	151	407	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod08g1142	478	PANTHER	RIBOSOMAL PROTEIN S6 KINASE	1	472	-	-
	Dod08g1142	478	PANTHER	SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19	1	472	-	-
	Dod08g1142	478	ProSiteProfiles	Protein kinase domain profile.	151	407	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod08g1142	478	SMART	pkinase_C_6	408	468	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Dod08g1142	478	ProSitePatterns	Protein kinases ATP-binding region signature.	157	180	IPR017441	GO:0005524
	Dod08g1142	478	Gene3D	Phosphorylase Kinase; domain 1	149	450	-	-
	Dod08g1142	478	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	270	282	IPR008271	GO:0004672\|GO:0006468
	Dod08g1142	478	SUPERFAMILY	Protein kinase-like (PK-like)	148	466	IPR011009	-
	Dod08g1142	478	Gene3D	Transferase(Phosphotransferase) domain 1	231	426	-	-
	Dod08g1142	478	SMART	serkin_6	151	407	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod08g1142	Dod-Chr8	14558667	14562631	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod08g1142	1	470	AGC Kinase Gene Family	AT3G08720	61.954	0.0	607

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC-Pl	Dod08g1142		Pkinase	1.5e-76	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod08g1142	K04688		-	gmx:100803509	696.812