Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1139 ATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGGATGAGAGGTGCATTTGGAAAGCCACAGGGTACATGTGCTCGAGTTGCCATTGGGCAGGTCCTTCTTTCTGTTCGCTGCAAGGACAACAACAGCCACCATGCACAGGAGGCTCTCCGTCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAGTGGGGATTTACCAAGTTTAACCGAACTGATTATCTGAAGTTCAAGTCAGAGAATAGGATTATGCCTGATGGTGTGAATGCAAAGCTCCTTGGGTGCCATGGACCACTGGCTAACCGTCAACCTGGAAGAGCATTTTTGCCACCCAGTGCTACTGCTTAG 366 0.4918 MLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDNNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKFKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLPPSATA* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1139 121 SUPERFAMILY Ribosomal protein L16p/L10e 1 72 IPR036920 GO:0003735|GO:0005840|GO:0006412
Dod08g1139 121 CDD Ribosomal_L16_L10e 10 65 IPR016180 GO:0003735|GO:0005840|GO:0006412
Dod08g1139 121 PANTHER 60S RIBOSOMAL PROTEIN L10 1 115 IPR001197 GO:0003735|GO:0005840|GO:0006412
Dod08g1139 121 Gene3D Ribosomal protein L10e/L16 1 77 IPR036920 GO:0003735|GO:0005840|GO:0006412
Dod08g1139 121 Pfam Ribosomal protein L16p/L10e 5 65 IPR016180 GO:0003735|GO:0005840|GO:0006412
Dod08g1139 121 ProSitePatterns Ribosomal protein L10e signature. 7 28 IPR018255 GO:0003735|GO:0005840|GO:0006412
Dod08g1139 121 Gene3D - 78 113 - -
Dod08g1139 121 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1139 Dod-Chr8 14544147 14545092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1139 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 84.874 3.23e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1139 K02866 - pvy:116105818 236.498