Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1137 ATGGAATCTTTGGATGCCACAAATTCTTCTAGTTCATCACCACCATCATCATCTTCTGGTGGTGTGAATAGTAACAGCAATAATAGTAGTAATAGTAATGATAACAATGGTAACAGTAATGGTAATAGTCGTAGTGGTGGCACTGTGACATGGTATGGAATGAGGTTACCATCTGTTAGCCCCTTGCGTTCCCCGCTTTCCTTTTTGTTGGATTACTCTGGCATTCTGCGTTCACCCCATGATTCTGAGGCTGTGATTGTGAACAATGGAGTTGTTTCCAGTTTGGAATTGCGGCCTGAGGTCCGAATTCGGCCACTTGATAATGCTGGTGGTGGTGATGCCGCTGCTTCCGGGGACCCCTGCAACAGTTCTGGAGAGGTTGCAATAAGGATAATTGGAGCTGGAGAGCATGATCACAATGTGGGGTTAGGTTCTGCTTCCTCGTCGTCGAGGAATAATCAGCTTGGAGAAGTGGGGTATGATGATTATGATGAGATGATTGGTGATAGAGGTGGTGGAGTGACTGCATTAGATGATGATGATGATGCGGAGGGCCGCAATGGGATTGCGGCCGGTGAGAGGGTTCCGTTGGTGCCTTCGTCGTCGTCATTGGCTGGTAGTGGACAGGCTGATATTGATGCTGGGAATGGCGTAGAAAATAACGGTAGGGATTCGTCGTCCTACCAGAGATATGATATTCAGCAGATTGCAAAGTGGATTGAGCAGATTCTTCCTTTCTCGCTCTTGTTGTTGGTTGTTTTCATCCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATATCGGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCTTGAAGGGAGATAGAAAAGTCTCAATTCTTGTTGTTATCTGTTCTGCCTTCATGCTTCATGTGATGTTCATTTATTGGTGGTATCGAAATGATGATCTTTTATATCCACTGGTCTTAGTTCCCCCAAGAGCAACTCCTTTCTGGCATGCAATATTCATCATTTTGGTCAATGATACATTGGTGAGGCAGGCAGCAATGGCCTTCAAGTGTTTTCTGTTAATATATTACAAAAATGGCAGAGGTCATAGCTTCCGTCGGCAGGCTCAAATGTTAACTCTGGTTGAGTACACACTGCTGTTATATCGTGCCTTGTTGCCAACACCTGTTTGGTACCGGTTCTTCTTAAACAGGGCTTATGGCAGTCTGTTTTCATCACTGACCACAGGGTTGTATTTAACTTTTAAGTTGACATCTGTGGTTGAGAAGGTCCAATGCTTCATTTCTGCCTTGAAAGCATTATCAAGAAAGGAAGTTCATTATGGGGTTAATGCTACAATGGAACAGGTTAATGCCGCTGGTGACTTATGCGCCATATGCCAGGAGAAAATGCATGCCCCCATATTGTTGCGCTGTAAACACATCTTCTGTGAGGAGTGTGTATCAGAATGGTTTGAGAGAGAAAGGACTTGCCCATTATGCAGAGCATTGGTAAAGCCTGCTGATCTGCGGACCTTCGGAGATGGATCAACAAGCCTCTTTTTCCAGTTGTTCTAA 1566 0.4444 MESLDATNSSSSSPPSSSSGGVNSNSNNSSNSNDNNGNSNGNSRSGGTVTWYGMRLPSVSPLRSPLSFLLDYSGILRSPHDSEAVIVNNGVVSSLELRPEVRIRPLDNAGGGDAAASGDPCNSSGEVAIRIIGAGEHDHNVGLGSASSSSRNNQLGEVGYDDYDEMIGDRGGGVTALDDDDDAEGRNGIAAGERVPLVPSSSSLAGSGQADIDAGNGVENNGRDSSSYQRYDIQQIAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSILVVICSAFMLHVMFIYWWYRNDDLLYPLVLVPPRATPFWHAIFIILVNDTLVRQAAMAFKCFLLIYYKNGRGHSFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNRAYGSLFSSLTTGLYLTFKLTSVVEKVQCFISALKALSRKEVHYGVNATMEQVNAAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1137 521 Pfam Zinc finger, C3HC4 type (RING finger) 458 501 - -
Dod08g1137 521 ProSiteProfiles Zinc finger RING-type profile. 460 498 IPR001841 -
Dod08g1137 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 508 IPR013083 -
Dod08g1137 521 SUPERFAMILY RING/U-box 451 503 - -
Dod08g1137 521 SMART ring_2 460 497 IPR001841 -
Dod08g1137 521 MobiDBLite consensus disorder prediction 170 188 - -
Dod08g1137 521 MobiDBLite consensus disorder prediction 170 225 - -
Dod08g1137 521 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 26 521 IPR044235 GO:0061630|GO:1904294
Dod08g1137 521 MobiDBLite consensus disorder prediction 143 162 - -
Dod08g1137 521 MobiDBLite consensus disorder prediction 1 46 - -
Dod08g1137 521 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 26 521 - -
Dod08g1137 521 ProSitePatterns Zinc finger RING-type signature. 475 484 IPR017907 -
Dod08g1137 521 CDD RING-HC_RNFT1_like 459 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1137 Dod-Chr8 14514306 14524587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1137 62 521 C3H Transcription Factor Family AT5G01960 59.570 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1137 - K22379 gmx:100784614 590.112