Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1102 ATGGGGGAGGGAGAGAGCCCAAAACCAGAACCCGAACCCAGAGACCACCACGACGAAGACGAAGAAGAACCGTTGTCGGACACAACAACAACAGCAGCAACAACATGGAACCACATGGCGAAACAACAGAGCCAGCAGGTGGCGTTGCAGCAGCTGTCGGAGAAGCTCATAAACGGCAGCCTGCAGTCCAAGATAGACGCCGCCCGCGAAATCCGCAAGCTCGTCCGGAAGTCCTCGTCGTCCGCCAAGACCCGCTCCAGGCTCGCGGCGGCCGGGGTGATCCAGCCGCTGGTCTTCATGCTCTCCTCTTCCAATCTTGATGCCCGAGAGTCCTCTCTCCTCGCTCTCCTCAACCTCGCTGTCCGCAACGAACGAAACAAGGTCAAAATAGTGACAGCTGGTGCCATTCCTCCTCTGGTGGAGCTCCTCAAGTTGCAAAATGGCAGTATACGAGAATTAGCTACGGCAGCAATCTTGACACTCTCGGCTGCAGCTCCCAACAAGCCCGTTATTGCTGCTTCGGGAGCTGCACCTCTCCTTGTTCAGATTCTCAACTCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAGCCCTCCATAATCTTTCCACCAGCATCGAAAATTCAGCCGAGCTCCTTGATGCCAGTGCTGTTTCCCCTCTTATCAACCTCCTTAAAGAGTGCAAGAAGTACTCCAAGTTCGCAGAAAAAGCTACGGCACTACTCGAAATCCTTTCAAACTCTGAAGAGGGACGAATCGCAATCTCAATGGCAGACAGTGGAATTTTAACCATAGTAGAGACGGTTGAAGATGGATCACTAGTCAGCACAGAACATGCTGTTGGCACTTTGCTGTCATTGTGCCTAAGCTGCCGGGATAAATACCGGGAACTGATCCTTAAAGAAGGAGCAATCCCAGGTCTGCTGCAACTGACAGTGGAGGGCACGACCAAAGCTCAAGATAGAGCGCGCATGCTTTTGGATTTGCTTAGAGATTCTCCCCCAGAGAGAAGATTACCCTCCTCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAGAGGGTAGATGGTGTAGACAAAGCTGCTGAAACTGCCAAACGGCTATTGCAAGATATGGTTCAGAGGAGTATGGAACAAAGCTTGAACTGCATTCAGCATAGGGCAGCATCTTGTACTCCTTCTGTGATTCCATCCACTTGA 1200 0.5108 MGEGESPKPEPEPRDHHDEDEEEPLSDTTTTAATTWNHMAKQQSQQVALQQLSEKLINGSLQSKIDAAREIRKLVRKSSSSAKTRSRLAAAGVIQPLVFMLSSSNLDARESSLLALLNLAVRNERNKVKIVTAGAIPPLVELLKLQNGSIRELATAAILTLSAAAPNKPVIAASGAAPLLVQILNSGSVQGKVDAVTALHNLSTSIENSAELLDASAVSPLINLLKECKKYSKFAEKATALLEILSNSEEGRIAISMADSGILTIVETVEDGSLVSTEHAVGTLLSLCLSCRDKYRELILKEGAIPGLLQLTVEGTTKAQDRARMLLDLLRDSPPERRLPSSVLEKIVYDIAERVDGVDKAAETAKRLLQDMVQRSMEQSLNCIQHRAASCTPSVIPST* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1102 399 Pfam Armadillo/beta-catenin-like repeat 166 203 IPR000225 GO:0005515
Dod08g1102 399 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 175 217 IPR000225 GO:0005515
Dod08g1102 399 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 32 364 - -
Dod08g1102 399 PANTHER U BOX DOMAIN-CONTAINING 32 364 - -
Dod08g1102 399 SUPERFAMILY ARM repeat 49 349 IPR016024 -
Dod08g1102 399 Gene3D - 17 395 IPR011989 -
Dod08g1102 399 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 216 260 IPR000225 GO:0005515
Dod08g1102 399 SMART arm_5 81 121 IPR000225 GO:0005515
Dod08g1102 399 SMART arm_5 205 247 IPR000225 GO:0005515
Dod08g1102 399 SMART arm_5 164 204 IPR000225 GO:0005515
Dod08g1102 399 SMART arm_5 122 163 IPR000225 GO:0005515
Dod08g1102 399 MobiDBLite consensus disorder prediction 1 23 - -
Dod08g1102 399 MobiDBLite consensus disorder prediction 1 32 - -
Dod08g1102 399 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 134 IPR000225 GO:0005515
Dod08g1102 399 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 134 176 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1102 Dod-Chr8 14021532 14028534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1102 51 337 U-box Gene Family AT3G54790 39.583 1.41e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1102 K08332 - gmx:100782472 554.288