Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1099 ATGGTTAAGGTACTGGGTTCTCACACTGTACCTTACGCTCTGGATGATCAAGCTGACATAGCAACTGGTTCCCTATTTCCATGCATTGTTAGGACAATTCTACACATTGTTGGCATCCCGCTCTCATCATCCTCCACTTCACCAACCCCATCACCAAATGCCTCCCAACACTCGCCACCCGAGTCCTTCGATTTCCTTCTTAGTAGCCCCAGCAGCCCCACTGAGTGTCTAATTGAAGAGTTTAGAAGCCGGATGCCGGCGCTCCGGTTCGATAGTGTGTGTTCCTGTGAAGAACTTGAGCATGATTGCTGTGTTTGCCTCACTGAGTTTGAGCCTGAATCAGAGGTGAACCACTTGTCTTGTGGCCATCTCTTCCACAGAGTATGCTTGGAGAAGTGGCTAGACTACTGGAATCTCACATGTCCACTTTGCAGGACTTCCTTGATGCCCGAAGAGGATGATCCATGGTCAATAGTAACCAATGAACCTTGGTCTCTAGTAACCAATGAGTGA 513 0.4854 MVKVLGSHTVPYALDDQADIATGSLFPCIVRTILHIVGIPLSSSSTSPTPSPNASQHSPPESFDFLLSSPSSPTECLIEEFRSRMPALRFDSVCSCEELEHDCCVCLTEFEPESEVNHLSCGHLFHRVCLEKWLDYWNLTCPLCRTSLMPEEDDPWSIVTNEPWSLVTNE* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1099 170 Pfam Ring finger domain 102 145 IPR001841 -
Dod08g1099 170 PANTHER - 24 153 IPR044249 -
Dod08g1099 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 151 IPR013083 -
Dod08g1099 170 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 24 153 - -
Dod08g1099 170 SMART ring_2 103 144 IPR001841 -
Dod08g1099 170 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Dod08g1099 170 SUPERFAMILY RING/U-box 94 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1099 Dod-Chr8 13970723 13972289 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1099 24 154 C3H Transcription Factor Family AT2G04240 50.376 5.59e-34 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1099 K16285 - gmx:100786803 179.874