Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1098 ATGGGTTATTTATGTGATTTTTGTGGAGAGCAAAGGTCCTTGGTGTACTGCCGCTCGGATGCTGCATCCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCCAATGCCCTGTCCAGGCGTCATTCGAGAACTCTTGTATGTGAGAGATGTAACTCACAACCTGCATTTGTTAGGTGCACTGAAGAGAAAATTTCACTTTGTCAGAACTGTGATTGGTTGGGTCATGGTACCAATCCATCTTCTTCAGCGCATAAGAGACAAACGATCAATTGCTACTCTGGCTGTCCTTCAGCTGCGGAATTTTCTTCAATATGGTGCTTTTTCTCAGATATACCCTCTATTGGTGAAACATGTGAGCAGGAACTTGGTTTAATGAGCATTAATGAGACCCCAGCAAACCAGAGTGCACCTGGTTCAGCTGAAGTGACCAATCTACTCAGCAAAGATAAACCATGGGTTGGCACATCTTCAATACCTCAGTCCAGCTCAGAACCTCATATTCTAGACCAGCTGCCTGGACCTTCCAATGGATGCATGCCCAAGTTATATTGTCCTGGTAAAAAAGCTTCTGCACTTGATGATGATAATCTTTATGATGATTTCAACATGGATGAAGTGGATTTGGATCTTGAGAACTATGAGGAACTTTTTGGGGTGGCTCTCAGTCATTCTGAGGAGCTTTTTGAAAATGGTGGAATTGATAGCTTATTTGGTACAAAGGACATGTCTGCTAGTGCTGGTGATTCTAATTGTCAGGGTGCTGGTTCATCCGTTGGCTTGGTCAATGCAATACAACCAGCATGCAGCAATGCTGCATCTGCAGATTCAATGAGGAGTACTAAAACTGAACCAATTGTTTGTTTTACGGCAAGGCAATCCCAATCAAACATTTCCTTTTCTGGTGCTACCAAAGATAATAGTGCTGGTGATTATCAAGACTGTGGGGCCTCTTCAATGCTTCTCATGGGAGAGCCACCCTGGTGCCCTCCTTGCCCTGAGAGTTCTCTGCAATCTGCTAACCGCAGCAATGCTGTCATGCGATATAAGGAAAAGAAAAAGACACGGAAGTTTGAGAAGCGAGTAAGGTATGCCTCTCGTAAGGCGAGGGCTGATGTCAGAAGGCGCGTGAAGGGCCGGTTTGTCAAAGCTGGTGACTTGTATGATTACGACCCTTTGAGCCAAACCAGAAGCTGCTGA 1200 0.4475 MGYLCDFCGEQRSLVYCRSDAASLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRCTEEKISLCQNCDWLGHGTNPSSSAHKRQTINCYSGCPSAAEFSSIWCFFSDIPSIGETCEQELGLMSINETPANQSAPGSAEVTNLLSKDKPWVGTSSIPQSSSEPHILDQLPGPSNGCMPKLYCPGKKASALDDDNLYDDFNMDEVDLDLENYEELFGVALSHSEELFENGGIDSLFGTKDMSASAGDSNCQGAGSSVGLVNAIQPACSNAASADSMRSTKTEPIVCFTARQSQSNISFSGATKDNSAGDYQDCGASSMLLMGEPPWCPPCPESSLQSANRSNAVMRYKEKKKTRKFEKRVRYASRKARADVRRRVKGRFVKAGDLYDYDPLSQTRSC* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1098 399 CDD Bbox1_BBX-like 4 47 - -
Dod08g1098 399 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dod08g1098 399 ProSiteProfiles CCT domain profile. 342 384 IPR010402 GO:0005515
Dod08g1098 399 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Dod08g1098 399 CDD Bbox1_BBX-like 47 90 - -
Dod08g1098 399 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 398 - -
Dod08g1098 399 Pfam CCT motif 342 384 IPR010402 GO:0005515
Dod08g1098 399 SMART bboxneu5 48 90 IPR000315 GO:0008270
Dod08g1098 399 SMART bboxneu5 4 47 IPR000315 GO:0008270
Dod08g1098 399 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1098 Dod-Chr8 13960715 13965476 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1098 1 398 C2C2-CO-like Transcription Factor Family AT3G07650 56.386 1.78e-150 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dod08g1098 CCT 6.3e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1098 - - gmx:100783016 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1098 08 13960715 13965476 Dod08g1098 08 13960715 13965476 ECH