Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1096 ATGGGTTATTTATGTGATTTTTGTGGAGAGCAAAGGTCCTTGGTGTACTGCCGCTCGGATGCTGCATCCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCCAATGCCCTGTCCAGGCGTCATTCGAGAACTCTTGTATGTGAGAGATGTAACTCACAACCTGCATTTGTTAGGTGCACTGAAGAGAAAATTTCACTTTGTCAGAACTGTGATTGGTTGGGTCATGGTACCAATCCATCTTCTTCAGCGCATAAGAGACAAACGATCAATTGCTACTCTGGCTGTCCTTCAGCTGCGGAATTTTCTTCAATATGGTGCTTTTTCTCAGATATACCCTCTATTGGTGAAACATGTGAGCAGGAACTTGGTTTAATGAGCATTAATGAGACCCCAGCAAACCAGAGTGCACCTGGTTCAGCTGAAGTGACCAATCTACTCAGCAAAGATAAACCATGGGTTGGCACATCTTCAATACCTCAGTCCAGCTCAGAACCTCATATTCTAGACCAGCTGCCTGGACCTTCCAATGGATGCATGCCCAAGTTATATTGTCCTGGTAAAAAAGCTTCTGCACTTGATGATGATGATAATCTTTATGATGATTTCAACATGGATGAAGTGGATTTGGATCTTGAGAACTATGAGGAACTTTTTGGGGTGGCTCTCAGTCATTCTGAGGAGCTTTTTGAAAATGGTGGAATTGATAGCTTATTTGGTACAAAGGACATGTCTGCTAGTGCTGGTGATTCTAATTGTCAGGGTGCTGTTGTTGCTGAGGGTTCATCCGTTGGCTTGGTCAATGCAATACAACCAGCATGCAGCAATGCTGCATCTGCAGATTCAATGAGGAGTACTAAAACTGAACCAATTGTTTGTTTTACGGCAAGGCAATCCCAATCAAACATTTCCTTTTCTGGTGCTACCAAAGATAATAGTGCTGGTGATTATCAAGACTGTGGGGCCTCTTCAATGCTTCTCATGGGAGAGCCACCCTGGTGCCCTCCTTGCCCTGAGAGTTCTCTGCAATCTGCTAACCGCAGCAATGCTGTCATGCGATATAAGGAAAAGAAAAAGACACGGAAGTTTGAGAAGCGAGTAAGGTATGCCTCTCGTAAGGCGAGGGCTGATGTCAGAAGGCGCGTGAAGGGCCGGTTTGTCAAAGCTGGTGACTTGTATGATTACGACCCTTTGAGCCAAACCAGAAGCTGCTGA 1215 0.4477 MGYLCDFCGEQRSLVYCRSDAASLCLSCDRNVHSANALSRRHSRTLVCERCNSQPAFVRCTEEKISLCQNCDWLGHGTNPSSSAHKRQTINCYSGCPSAAEFSSIWCFFSDIPSIGETCEQELGLMSINETPANQSAPGSAEVTNLLSKDKPWVGTSSIPQSSSEPHILDQLPGPSNGCMPKLYCPGKKASALDDDDNLYDDFNMDEVDLDLENYEELFGVALSHSEELFENGGIDSLFGTKDMSASAGDSNCQGAVVAEGSSVGLVNAIQPACSNAASADSMRSTKTEPIVCFTARQSQSNISFSGATKDNSAGDYQDCGASSMLLMGEPPWCPPCPESSLQSANRSNAVMRYKEKKKTRKFEKRVRYASRKARADVRRRVKGRFVKAGDLYDYDPLSQTRSC* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1096 404 CDD Bbox1_BBX-like 4 47 - -
Dod08g1096 404 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dod08g1096 404 ProSiteProfiles CCT domain profile. 347 389 IPR010402 GO:0005515
Dod08g1096 404 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Dod08g1096 404 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 403 - -
Dod08g1096 404 CDD Bbox1_BBX-like 47 90 - -
Dod08g1096 404 Pfam CCT motif 347 389 IPR010402 GO:0005515
Dod08g1096 404 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 403 - -
Dod08g1096 404 SMART bboxneu5 48 90 IPR000315 GO:0008270
Dod08g1096 404 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1096 Dod-Chr8 13904181 13908964 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1096 1 403 C2C2-CO-like Transcription Factor Family AT3G07650 55.847 9.21e-150 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dod08g1096 CCT 6.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1096 - - gmx:100783016 686.411