Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1080 ATGGAAATCTTGTCTCCTACACATTATAGTCCCAATTCCAACCCCAACAATTACAATTGGTTAGTGGGAGATAGCAGGAGCACAAGATGGACACCTGAGGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTGCATGACAAGGACACCCCTGATAGGTGGCACAAAGTGGCTGCAATGATTCAAGGGAAGACAGTTGGTGATGTGATCAGGCACTACAGGAAATTAGAGGTAGACGTTTGTAACATAGAGGCTGGTTTGATCCCAGTTCCTGGCTATGGTGCTAGTTCTGCTACTAGTACTACCTCACCCTTCACCTTAGATTGGGTGAACACTCAAGGGTATGATGGGTTTAAAGGGCTCAGTGGAAAGAGATCTTCCTCAGTGAGGCCACCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAAGAACATAAATTGTTTCTACTTGGCCTGAAGAAGTATGGCAAAGGTGATTGGAGAAACATTTCACGCAATTTTGTCATTACTCGAACTCCAACTCAGGTGGCTAGCCATGCTCAGAAGTATTTCATCAGGCAACTTTCAGGAGGCAAAGACAAGAGGAGGGCTAGCATCCATGACATAACAACTGTTAATGTAACCGAAACTGGAACTTCTTCAGAAGACACCAAAAGATCCATTTCGCCTCAGCATTCTATGATGCTCTCACAACAGCAGCCAAATTCTACAGCTTCAATACCAAGAGCTCATTTTCAGTGGAATAATCAGCTAAATGCAGGAGTAGCTATGGCTCTCAGTCCTACTCAGTGA 795 0.4478 MEILSPTHYSPNSNPNNYNWLVGDSRSTRWTPEENKLFENALAVHDKDTPDRWHKVAAMIQGKTVGDVIRHYRKLEVDVCNIEAGLIPVPGYGASSATSTTSPFTLDWVNTQGYDGFKGLSGKRSSSVRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNVTETGTSSEDTKRSISPQHSMMLSQQQPNSTASIPRAHFQWNNQLNAGVAMALSPTQ* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1080 264 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 136 188 IPR006447 GO:0003677
Dod08g1080 264 Gene3D - 139 189 - -
Dod08g1080 264 CDD SANT 29 75 IPR001005 -
Dod08g1080 264 ProSiteProfiles Myb-like domain profile. 133 185 IPR001005 -
Dod08g1080 264 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 263 IPR043363 -
Dod08g1080 264 PANTHER MYB TRANSCRIPTION FACTOR MYB51 3 263 - -
Dod08g1080 264 ProSiteProfiles SANT domain profile. 25 80 IPR017884 -
Dod08g1080 264 Gene3D - 23 89 - -
Dod08g1080 264 Pfam Myb-like DNA-binding domain 29 75 IPR001005 -
Dod08g1080 264 Pfam Myb-like DNA-binding domain 140 185 IPR001005 -
Dod08g1080 264 MobiDBLite consensus disorder prediction 120 140 - -
Dod08g1080 264 SUPERFAMILY Homeodomain-like 28 82 IPR009057 -
Dod08g1080 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 189 IPR017930 -
Dod08g1080 264 SMART sant 137 187 IPR001005 -
Dod08g1080 264 SMART sant 26 78 IPR001005 -
Dod08g1080 264 CDD SANT 140 185 IPR001005 -
Dod08g1080 264 SUPERFAMILY Homeodomain-like 134 188 IPR009057 -
Dod08g1080 264 ProSiteProfiles SANT domain profile. 141 189 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1080 Dod-Chr8 13751003 13753805 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod08g1080 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1080 - - gmx:778034 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1080 08 13751003 13753805 Dod08g1080 08 13751003 13753805 ECH
Dod08g1080 08 13751003 13753805 Dod08g0724 08 8699820 8702135 ECH
Dod08g1080 08 13751003 13753805 Dod05g0569 05 8242646 8245542 ECH
Dod07g1487 07 40676384 40678908 Dod08g1080 08 13751003 13753805 ECH